Neisseria shayeganii: H3L94_11125
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Entry
H3L94_11125 CDS
T07084
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nsg
Neisseria shayeganii
Pathway
nsg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nsg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3L94_11125 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsg03021
]
H3L94_11125 (rpoC)
03400 DNA repair and recombination proteins [BR:
nsg03400
]
H3L94_11125 (rpoC)
Enzymes [BR:
nsg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3L94_11125 (rpoC)
Transcription machinery [BR:
nsg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3L94_11125 (rpoC)
DNA repair and recombination proteins [BR:
nsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3L94_11125 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
DUF5979
Motif
Other DBs
NCBI-ProteinID:
QMT40365
UniProt:
A0A7D7N393
LinkDB
All DBs
Position
complement(2264213..2268394)
Genome browser
AA seq
1393 aa
AA seq
DB search
MKALLDLFNPLQTAGVDEEFDAIRIGIASPDTIRAWSYGEVKKPETINYRTFKPERDGLF
CAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFL
KSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEEDYYNKLEEYGEDFD
AKMGAEGIRELLRSLDIAAEVDILRQELESTGSETKIKKLAKRLKVLEAFLRSGMKLEWM
IMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKR
MLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITV
GPYLRLHQCGLPKKMALELFKPFIFHKLEIQGLAATVKAAKKLVEQEVPEVWDILEEVIR
EHPILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
MEARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKINALGEGSLFADVQEVHRAY
HTKQVELGTKITVRLREWVRNEQDEFEPVTTRYETTVGRALLSEILPKGLPFEYINKALK
KKEISKLINASFRLCGLRDTVIFADHLMYTGFGFAAKGGISICVDDMEVPKEKAALLAEA
QSEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDRIAKAMMDNLSKQKVLDSEGKEVEQE
SFNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATH
GARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTDGFVMKAVVQGGDVIEPLRD
RILGRVTAADVVDPANGATLVEAGTLLNEQMVDLIDQSGVDEVKVRTPITCKTRYGLCAH
CYGRDLARGKLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGT
ARFNSQMRYVMNNKGELIVIGRSSEVVIHDDIGRERERHKVPYGATLLVQDGSGVKAGQT
LATWDPHTRPMITEHAGRVKFENVEEGVTVTKQTDEITGLSTLVVIDGKRRSAGTSKLLR
PTVKLLDENGEEVKMPGTETAISMAFPVGAIITVREEQEVGKGDVLARIPQASSKTRDIT
GGLPRVAELFEARVPKDAGMLAEVTGTVSFGKETKGKQRLIITDLDGVAHETLISKEKQI
LVHDGQVVNRGETIVDGSVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVI
IRQMLRRVNIADAGETGFITGEQVERGDVMQANERAVADGKEPARFDNILLGITKASLST
DSFISAASFQETTRVLTEAAIMGKQDDLRGLKENVIVGRLIPAGTGLTYHRSRRRAWQAH
HEAEVNEQVDEAE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccttgttagatttgttcaaccccctgcaaacggccggtgtggacgaagaattc
gatgccatccgcatcggcatcgcttcgcccgacaccatccgcgcatggtcttacggcgaa
gtgaaaaaaccggaaaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttt
tgcgccaaaattttcggcccggtgaaagattacgaatgcttgtgcggcaaatacaagcgt
ttgaaattcaaaggcgtgacctgtgaaaaatgcggtgtggaagtgaccttgtccaaagta
cgccgcgaacgcatgggccacatcgaattggccgcgccggtggcccacatctggttcttg
aaatccctgccttcccgtttgggcatggtgttggacatgacgctgcgcgacatcgagcgc
gtgctgtatttcgaagcctttgtggtcaccgaccccggcatgaccccgctgcaacgccgc
cagctgctgaccgaagaagattattacaacaagctggaagaatacggcgaagatttcgac
gccaaaatgggtgccgagggcattcgtgaattgttgcgcagcttggacattgccgccgaa
gtggacattctgcgtcaggagttggagagcaccggatcggaaaccaagatcaaaaaactg
gctaagcgcctgaaagtattggaagccttcctgcgctccggcatgaagctggagtggatg
atcatggatgtgctgccggtgctgccgcccgatttgcgcccgctggtgcctttggacggt
ggccgcttcgccacttccgatttgaacgacctttaccgccgcgtgatcaaccgcaacaac
cgcctgaaacgcttgttggaactgaatgcgcccgacatcatcgtgcgcaacgaaaagcgt
atgctgcaggaagcggtagattccctgctcgacaacggccgccgcggtaaagcgatgacc
ggcgccaacaaacgtccgctgaaatcgctggccgacatgatcaaaggtaaaggcggccgt
ttccgtcaaaacctgttgggtaaacgggtggactattccggccgttcggtgatcaccgtg
ggcccctacctgcgcctgcatcaatgcggtctgccgaagaaaatggccttggagctgttc
aagccctttatcttccacaaactggaaatccaaggcttggccgccaccgtgaaagccgcc
aagaaactggtggagcaggaggtgccggaggtgtgggacatcctggaagaggtgatccgc
gaacacccgattctgctcaaccgtgccccgaccctgcaccgcttgggtattcaggctttc
gagccgattctgatcgagggcaaagccatccagctgcatcccttggtgtgtgccgcgttc
aacgccgacttcgacggcgaccaaatggcggtacacgtgcccttgagcttggaggcgcaa
atggaagcccgcaccttgatgctggcctccaacaacgtgttgtcgcccgccaacggcgag
ccgattatcgtgccttcgcaagacatcgtattgggtctctactacatgacccgcgacaaa
atcaatgccttgggcgaaggcagtctgtttgccgatgtgcaggaagtgcaccgtgcctac
cacaccaaacaggtggagttgggcaccaagattaccgtgcgtctgcgcgaatgggtgaga
aacgagcaagacgagttcgaaccggtgaccacacgctacgagaccaccgtcggccgtgcc
ctgctcagcgaaatcctacccaaaggcctgccgtttgagtacatcaacaaggcactgaag
aaaaaggaaatatccaagctcatcaatgcttcgttccgcctgtgcggcctgcgcgacacg
gtgatttttgccgaccacctgatgtacaccggcttcggttttgcggccaaaggcggcatc
tccatctgcgtggacgacatggaagtgccgaaagagaaagccgccctgctggccgaagcg
caaagcgaagtgaaagaaatcgaagaccaataccgccaaggtttggtgaccaacggcgag
cgctacaacaaagtggtcgatatttggggccgcgccggcgaccgcattgccaaagccatg
atggacaacctttccaagcagaaggtgctcgacagcgaaggcaaggaagtggagcaggag
tcgttcaattccatctatatgatggccgactcgggcgcccgtggttctgccgcccagatc
aaacagctttccggtatgcgcggcttgatggccaagccggacggctcgattatcgaaacg
ccgatcacttcgaacttccgcgaaggcctgaccgtattgcaatactttatcgccacccac
ggtgcgcgtaagggtttggcggataccgctttgaaaaccgctaactcaggctacctgacc
cgccgcttggtggacgtgacccaagacttggtggtggtggaagacgactgcggcaccacc
gacggcttcgtgatgaaagccgtggtgcaaggcggcgatgtgatcgagccgctgcgcgac
cgcattttgggccgcgtgaccgccgccgatgtggtggatcccgccaacggcgccactctg
gtggaagccggcaccctgctcaacgagcagatggtggacttgatcgaccaatccggcgtc
gatgaagtgaaagtacgcaccccgattacctgtaaaacccgctacggcctgtgcgcacac
tgttacggccgtgacttggcgcgcggcaaactggtgaacaccggcgaggcggtgggcgtg
attgccgcccagtcgatcggtgagccaggtacccagctgaccatgcgtaccttccacatc
ggcggtgccgcttcgcgtgccgccgccgccagccaagtggaagccaaatcgaacggtacc
gcccgcttcaacagccagatgcgctatgtgatgaacaacaaaggcgaactgattgtgatc
ggccgttcctccgaagtggtgattcacgacgacatcggccgcgagcgcgagcgtcataaa
gtgccttacggcgccaccctgctggtgcaggacggctcgggagtgaaagccggccaaacc
ctggctacctgggatccgcatacccgcccgatgattaccgaacacgccggccgcgtgaag
ttcgaaaacgtggaagaaggcgttaccgttaccaaacaaaccgacgaaatcaccggtttg
tccaccttggtggtaatcgacggcaaacgccgcagcgccggcaccagcaaattgctgcgc
ccgaccgtgaagcttttggacgagaacggcgaagaagtgaaaatgccgggcaccgaaacc
gccatctccatggccttcccggtgggcgccatcatcaccgtgcgtgaagaacaagaagtg
ggcaagggcgacgtgttggcgcgtattccgcaagcctcgtccaaaacccgcgacattacc
ggcggtctgccgcgcgtggccgagctgttcgaagcccgcgtacccaaagacgccggcatg
ttggccgaagtgaccggtaccgtgtctttcggtaaggaaaccaaaggcaaacagcgcctg
atcatcaccgatttggacggcgtggcccacgagaccctgatttcgaaagagaaacagatt
ctggtgcacgatggccaagtggtgaaccgcggcgaaaccattgttgacggttccgtggat
ccgcacgacattctgcgcctgcagggcatcgaagcgctggcccgctatatcgtgcaagag
gtgcaggaggtttaccgcctgcaaggtgtgaagatttccgataagcacatcgaagtgatc
atccgccaaatgctgcgccgggtgaacattgccgatgccggcgaaaccggtttcatcacc
ggcgagcaggtggagcgcggcgatgtgatgcaggccaacgagcgtgcggtggctgacggc
aaagagcctgcccgtttcgataacatcctgctcggcatcaccaaggcctctttgtctacc
gacagctttatttcggccgcctccttccaagagaccacccgcgtgctcaccgaagccgcg
atcatgggcaaacaggacgatttgcgcggtttgaaagaaaacgtgattgtcggccgcctg
attccggccggtaccggtttgacctaccaccgcagccgccgccgcgcatggcaggcacat
cacgaagccgaagtgaacgaacaagtggacgaagccgaataa
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integrated database retrieval system
