Nostoc sphaeroides: GXM_02609
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Entry
GXM_02609 CDS
T06325
Name
(GenBank) rpoC, DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nsh
Nostoc sphaeroides
Pathway
nsh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nsh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GXM_02609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsh03021
]
GXM_02609
03400 DNA repair and recombination proteins [BR:
nsh03400
]
GXM_02609
Enzymes [BR:
nsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GXM_02609
Transcription machinery [BR:
nsh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GXM_02609
DNA repair and recombination proteins [BR:
nsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GXM_02609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QFS45132
UniProt:
A0A5P8VXJ6
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All DBs
Position
Gxm1:complement(2355073..2359146)
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AA seq
1357 aa
AA seq
DB search
MTNEKMIFRNRVVDKGQLRNLISWAFTNYGTARTAVMADKLKDLGFRYATKAGVSISVDD
LMIPPTKRLLLEAAEEEIRATETRYQRGEITEVERFQKVIDTWNGTSEALKDEVVVHFKK
TNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPIRPMTEGAKTLIPL
GNRLMGRVIGEDVLHPVTKEVIAPRNTPVSEDLAKKIDKSGVAEVVLRSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKIDG
TVKLPRKLKTRTYRTRHGEDALYVEANGIMLLEPTKVGDVTPENQEVHLTQGSTLYVFDG
NKVKQGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVQFAEVVPEQKTDRQGNTTTTAA
RGGLIWILSGEVYNLPPGAELVVKNGDAIASNGVLAETKLTSLHGGVVRLPEATPGKSTR
EIEIITASVVLDQATVTVQSSQGRNNYLVSTGNNQVFNLRATPGTKVQNGQVVAELIDDR
YRTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEESHEVNKDISLLLVEDGQFVE
AGTEVVKDIFCQNSGVIEVTQKNDILREVVVKPGELLMVDDPESVIGRDNTFIQPGEEFQ
GNVATELRYIQYVETPEGPALLSRPVVEFAVPDNPDVPSTTSVSQQTGRSIQLRAVQRLP
YKDSERVKSVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELVEDTEDPEVQRLQLVIL
ESLVIRRDITADATQGSTQTTLEVHDGLTIAPGSVVARTQILCKEGGEVRGVRQGTENVR
RCLVLRDADRLTINTSTQPKVKVGDLLVEGTEVAPGVFAPESGQVVDVKKLGVKSEELGV
NSETPNSSLQTQNYVVTTRIGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDII
QGLPRIEELLEARKPKEACILCRRGGEVKVVYAESGDEAIAIKVVESNGVVTDYPLGPGQ
NLIVPDGSIVLAGQPLTDGPSNPHEILEIFFSLGSEDGIYACASHALQKVQSFLVNEVQM
VYQSQGIDISDKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGAR
AQYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPA
GTGYNTYDEPGAIEDYAAEITSSVLDEVDDPLDMVLDDRTARTYNLDSPTLGESGFGSRR
AERSVLDDEDELIADEVVDDDDFEEVEEDDEDDFDDE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgaaaaaatgatttttcgcaatcgggtggttgacaaaggtcaactgagaaat
ttaatttcttgggcctttacaaattatggtacggcgcgaaccgcagtgatggcggacaaa
ctgaaagatttgggatttcgctatgctaccaaagcaggggtttccatcagtgtagatgac
ttgatgataccaccaactaagcgattgctattagaggcagccgaggaagaaattcgcgct
actgaaacccgttatcaacggggagaaatcactgaagtagaacgcttccaaaaagtaatc
gatacttggaatggtaccagtgaagccttgaaagatgaagtcgtcgtccacttcaagaag
actaatcccctcaactccgtatacatgatggcattctccggggcacggggtaacatctct
caagtccggcaattggtggggatgcggggactgatggcagatcctcaaggggaaattatc
gatttgcccatcaaaaccaatttccgtgaaggactcactgtaacggaatatattatttcg
tcttatggtgccagaaaaggattggtggatactgccttgcggacggctgactctggttat
ctcacccggcgtttggtggacgtatcccaggatgtgattattcgggaatttgactgtggt
accaccagaggaattcccattcgaccaatgacagaaggtgctaaaaccttaatccctctg
ggaaaccgcttgatgggacgggtaattggcgaagatgtgctgcatccggtgacaaaagaa
gtaattgcaccacgcaataccccagtttctgaggacttggctaagaaaatcgacaaatct
ggggtggcagaagttgtgctgcggagtcccctaacttgtgaagcggcacgttctgtctgt
caacactgctacggctggagtttagcccacgctaagatggtggacttgggcgaagctgta
gggattattgccgcccaaagtatcggtgaacctggtactcagttaaccatgcggacattc
cacacaggtggtgtgtttaccggagaagtggcgcaacaagttcgctctaaaattgatggg
actgtcaaacttccccgcaaactgaaaaccagaacgtatcgtacccgccacggggaagat
gccctctatgttgaagctaatggcatcatgcttttggagccaacaaaagtaggcgatgtt
accccagagaaccaagaggttcatcttacccaaggttcaacactatatgtatttgatgga
aataaggtaaaacaaggtcagttgttggcagaggttgcccttggtggacgcacaactcgg
actaatacagaaaaagcagttaaagatgtagcctctgacttagcaggggaagtgcaattt
gccgaagttgttccagaacaaaaaactgaccgtcaaggtaataccacaaccacagccgca
cgcggtggtttgatttggattttgtctggggaagtttataacttgccccctggtgcagaa
ttggtggtgaaaaatggtgatgcgatcgcttctaatggagttttagcagaaaccaagtta
accagtttgcacggcggtgtggtgcgtttgccagaagctaccccaggtaagagtaccagg
gaaattgaaattatcactgcttctgtggtattagaccaagcaacggtgacagtccaaagt
tcccaagggcgcaataactacttagtctccactggtaacaatcaagtatttaacctcaga
gctacaccaggcacaaaagtgcaaaatggtcaagtggtagccgagttaattgatgatcgc
tatcggacaaccactggtggtttcctaaaattcgcaggtgtagaagtccagaaaaaaggc
aaagccaagcttggttatgaagtcgtgcaaggcggtactcttttgtggattcctgaagaa
agccacgaagttaataaagatatttccttgctgttggtagaagatggtcagtttgtagaa
gctggcaccgaggtagtaaaagatattttctgccaaaacagtggtgtgatagaagttacc
cagaaaaacgacatcctgcgggaagtggtggttaagcctggggaactgctgatggtggac
gatccagaatcagttattgggcgagataacaccttcatccaaccaggtgaggaattccaa
ggtaacgtcgccacggaattgcgttatatccagtatgtggagacaccagaagggcctgcc
ctgttgagtcgtccagttgttgagtttgccgtacctgataatccagatgtgccatcaact
acatcggtgagccaacaaaccgggcgatcaattcaattgcgggctgtgcagcgactacct
tacaaagattcagaacgcgtcaaatctgttgaaggcgtggaactgctgcgaacccagcta
gtgctggaaattgagcaagaaggggaacaagaccataatgcttcaccccttgcagcagat
attgaattagtagaggatactgaagacccagaagttcaacgtttacaactggtaattttg
gaatccttggtaattcgtcgagacattaccgccgatgccacccaaggtagcacccaaacc
acacttgaggtacacgatgggcttaccatcgcccctggatctgtggttgcacgtacccaa
attttatgtaaagaaggcggggaagtgcggggtgttcgacaaggaaccgaaaacgtgcgt
cgctgcttggtattacgcgatgctgataggctgaccattaatactagtactcagccaaag
gtaaaagtgggtgacttgctagtagaaggtacagaagttgctcctggagtttttgcccca
gaatcagggcaagtagtggacgttaaaaagttaggagttaagagtgaggagttaggagtt
aattccgaaactcctaactcctcacttcaaactcagaactatgttgttactacccgtatc
ggtcgcccttatcgagtcagccctggtgctgtgttgcagatagaagacggcgatttggta
caacggggtgataacttggtgctgctggtgtttgaacgcgccaaaaccggagatattatt
caaggtttgccccggattgaagaactacttgaagctcgtaaacccaaagaagcgtgcatt
ttatgtcgccgggggggtgaagttaaggtagtttacgctgaaagtggtgatgaagcgatc
gctatcaaggtcgtagaatcaaatggcgtggtaacagattatcctctaggcccaggacaa
aatttgattgtgccagatggatcgattgtgttagcgggacaaccattaaccgatggccca
tccaatccccacgaaattttggaaatcttctttagcctgggttccgaagatggaatctat
gcttgtgctagccatgctttgcagaaggtacagtcattcttggtgaatgaagtgcaaatg
gtgtatcaatctcaaggaattgatatttccgataaacacattgaagtcattgttcgccag
atgaccaataaagtcaggattgatgatggtggtgacaccactatgcttcctggtgaattg
gtagaactgcgccaagttgagcaggtaaatgaagctatggcaatcacaggcggtgctagg
gcacagtataccccagtattgttggggatcaccaaagcatcgttgaataccgacagcttt
atttccgccgcatctttccaagagacaacacgggtacttaccgaagcagcgatcgaaggc
aaatccgactggctgcgaggattaaaggaaaacgtgattatcgggcggttgattccggcg
ggtactggctacaatacctatgatgaacccggtgcgattgaagactatgctgctgaaatt
accagtagtgtcttggatgaagtcgatgatcccctagatatggtcttagatgaccgcaca
gctcgcacctataatttagattctcctactcttggggaatctggttttggtagcagacgt
gcagaaaggtcagttctagatgacgaagatgaattaatcgccgatgaagtcgtagacgac
gacgattttgaggaagtagaggaagacgacgaggatgatttcgacgacgaatag
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