Nostoc sphaeroides: GXM_02850
Help
Entry
GXM_02850 CDS
T06325
Name
(GenBank) deaD, ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nsh
Nostoc sphaeroides
Pathway
nsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXM_02850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsh03019
]
GXM_02850
03009 Ribosome biogenesis [BR:
nsh03009
]
GXM_02850
Enzymes [BR:
nsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GXM_02850
Messenger RNA biogenesis [BR:
nsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXM_02850
Ribosome biogenesis [BR:
nsh03009
]
Prokaryotic type
rRNA helicases
GXM_02850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QFS45373
UniProt:
A0A5P8VY55
LinkDB
All DBs
Position
Gxm1:complement(2580253..2581785)
Genome browser
AA seq
510 aa
AA seq
DB search
MTLSFQELGISQERVEELEKIGFTEPTNIQVQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDINQRAVQAIVLTPTRELAMQVHDAIAQFIGNEGLRVLAIYGGQSIDRQMLQLKR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQTA
LFSATMPPSIRMLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLVRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQTFERH
NRQSWQVLTIPTRAQIEAKHILKLQEQVREALTGERLASFLPIVSELIEEYDAQAIAAAA
LQIAYDQTRPAWLSSDVEIPQEESSAPKPRLGKRRESSSSDRPRAAWKSDSSNGEERHSS
PKPKLRTSGQDSSVSPSKKIGSPTARESAS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgactctttcatttcaagaattaggcatttctcaagaacgtgtcgaagaactagaaaaa
atcggttttaccgaaccaactaacattcaagtgcaagcaattccccaattgctagccggt
cgtgatgtggtaggtcaatctcaaacaggaacaggcaaaacggcagcattttcactgcca
attttagagcggctagatatcaatcaaagagccgtacaagccatagttttaacaccaact
cgtgaattagcaatgcaagttcacgatgcgatcgcccaattcatcggcaatgaaggattg
cgggtgttagcaatttatggtggtcaatcaattgaccgtcaaatgttacaactcaaacgt
ggcgttcacatggttgtgggcactcccggacgggtgatcgatttgctcgatcgcggctgt
ttaaagctcgatcaagtaaagtggtttgtgttagatgaagccgatgaaatgttgagcatg
ggctttatcgacgatgtgataaaaatcctctctcaagcgcccgtagatcgccaaacagct
ttattctccgcaacaatgccaccatcaattcggatgttggtgaacaagttcttgcgatcg
cctgcaactgttaccgttgaacagccaaaagctgctcccaacaaaatcaatcaagtagct
tacttgatcccccgccactggacaaaagccaaagctttacagccgattctggaaatggaa
gatccagaaacagctttaatctttgtccgcaccagacgcacagccgcagaactcaccagt
cagttacaaggggctggtcacagtgtcgatgaataccacggtgacttgtcccaacaagcg
cgggaacggttattagtaagattccgtaaccgtcaagttcgttgggtggtagcaactgat
attgcagcacgagggttagatgtggatcaactctcccatgtaatcaacttcgacttaccg
gatagcgtagaaacctacgtccaccgtattggtcgtactggtcgtgctggtaaagaagga
acagcaatttctttagtacaaccatttgagcgccgcaaacagcaaacatttgaacgtcat
aaccgtcaaagttggcaagtgctgacgattcctacacgcgcccagattgaagcaaaacac
attctgaaattgcaagaacaggtgcgggaagctttgacaggtgagcgtttggcttcattc
ttgccgattgtcagcgaactaattgaagaatacgatgctcaagcgatcgccgccgccgca
ctgcaaattgcttacgatcaaactcgtcccgcttggttgagttcagatgtggaaattccc
caagaggaatcctccgctcccaaaccaagactcggcaaacgtcgtgaatcttcttccagc
gatcgcccccgtgctgcctggaaatcagatagcagcaatggtgaagaaagacattcttct
cccaagccaaaactgcggacaagtggacaggattcttctgtatctcctagtaaaaagata
ggttcacctacagctagagaatcagcttcttag
DBGET
integrated database retrieval system
