Nostoc sphaeroides: GXM_04206
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Entry
GXM_04206 CDS
T06325
Name
(GenBank) rnb, exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
nsh
Nostoc sphaeroides
Brite
KEGG Orthology (KO) [BR:
nsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nsh03016
]
GXM_04206
Enzymes [BR:
nsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GXM_04206
Transfer RNA biogenesis [BR:
nsh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GXM_04206
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
QFS46725
UniProt:
A0A5P8W1X4
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All DBs
Position
Gxm1:3802136..3804196
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AA seq
686 aa
AA seq
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MEKGTLVEFRVQGDRRLGIVERPDGKTRWFVVDERGQSHSLAPRQITYTVTGQTYKPSEI
ANFLEQIKPYLDPSSLEVAWELLVEDGEIVTPDQMANLLFSESTAPPCYAAHCLLSDDKL
YFKQKGDAYEPRTAAQVAERQHQVEVEALKAKGQQEFLTRVEQALKGEAVEWGRHDRQRL
EGLEKYAALIADTVRTGVNYDSLARAYPPSAPVLETMTMLGRPTTPQGAFQLLVDLGCWS
PYENLFLRRSSIPIQFPNKVLEVAQQRLDFPPIDSDTNRLDLTHLKVYTIDDETTTEIDD
GLSWEVLPDGRERLWVHIADPTRWLVPDDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLIQGRVCCALSFGIILGTSGGVEDYSIHTSSIKPTYRLTYEDVDEMLQLRVQAEPEIA
AIATWAQKRKAWRYAQGAISITMPEAMIKVKDDEINIDILDDSPSRQVVAEMMIVAGEVA
ARYGKTHNIPLPFRGQPQPELPPEEELLLLPAGFVRACAMRRCMPKSEMSITPLRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEVLPFSADQLKEVMMTVTSITQEVTMVERQT
NRYYALEYLRRHPEETWEVTVLMWLREDSNLALILIEDLGLQLPMVFKRSVNLGEQILVK
VSHADPQKDMIQFQEIVYQEAQTAAN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagggttcaaggcgatcgccgtctgggcatcgta
gaacgtccagacggtaaaacccgctggtttgtggtagacgaacgtggtcaatcccacagc
ctcgcgcctagacaaataacttatacagttaccggacagacgtacaagccctcagagatt
gccaattttctggagcagatcaagccttatttagatccatctagcttagaagtggcttgg
gaactactggttgaagatggggaaatagtcacccccgaccaaatggcgaatctgctattt
tctgaatcaactgcccctccttgttacgccgcccattgcttgttatcagacgacaaactt
tatttcaagcaaaaaggagacgcttacgagccgcgaactgctgctcaagtggcagaacgc
cagcatcaggtggaagtagaggcactaaaagctaagggacagcaggaatttttaactcgt
gtagagcaggcgcttaaaggtgaagcagtagagtgggggcgtcacgatcgccagcgctta
gaaggactcgaaaaatacgcagcgctaatagctgacacggtgcggacaggagttaattat
gactccttggctcgcgcttatccgccaagcgctccagtattagaaactatgaccatgctg
ggacggcccacaacaccccaaggagcctttcagttgttggtggatttgggttgctggagt
ccttatgaaaacttgttcctgcgtcgttcttcaattccgatccaatttcctaataaggta
ttagaagtggcgcaacagcgtttggatttcccgccgattgactcagatacaaaccgcctt
gatctgactcacctcaaggtctacaccattgatgacgaaactaccacagagatcgacgat
ggtctgagttgggaagtactacccgatggccgggaacgcctgtgggtgcatatcgccgat
ccgactcgatggttagtacctgacgatgaattagatttggaagctagaaagcggggtagc
acagtctatttacctacggggatgattcccatgttcccagaggtattagcgactgggcca
atgagtctgatccagggacgcgtttgttgcgccctcagtttcggaattattttaggtaca
agtgggggagtagaagattacagcattcataccagctcgattaagccaacttatcgcctc
acctacgaagatgtagatgaaatgctgcaattacgggtacaggcagaaccggaaattgct
gcgatcgctacttgggcacaaaaacgcaaagcttggcgttatgctcaaggggcaattagt
atcaccatgccggaagcgatgatcaaagtcaaagatgatgagatcaatattgatattttg
gacgattccccgtcgcggcaagtagtggcagaaatgatgattgttgccggtgaagttgcg
gctcgttatggtaaaactcataacatacctttgccctttcgcggtcagccgcaaccagaa
ttacccccagaagaagaattgctgctacttcccgccggattcgttcgcgcttgcgctatg
cgtcgttgtatgcccaagagcgaaatgagtattacgcctctgcgccatgctggtttgggt
ttggatacctacactcaagcaacctctcccatccgtcgttacagtgacttgcttactcac
ttccaacttaaagcccatttgcggggtgaagttttaccattttccgcagatcagctgaaa
gaagtgatgatgactgtcaccagcatcacccaagaagtgacgatggtggaacggcaaact
aatagatattatgctctagagtatttacgccgtcatccagaggaaacttgggaggtaaca
gtgttgatgtggctgcgagaagacagcaacttggctctaattttgatagaagatttgggt
ttgcagttaccaatggttttcaagcgttctgtgaacttgggcgaacagatattggtgaaa
gtcagccacgccgatccgcaaaaagatatgatccagtttcaagaaatagtttatcaagaa
gcccaaacagcagcgaattaa
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