Nostoc sphaeroides: GXM_04704
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Entry
GXM_04704 CDS
T06325
Name
(GenBank) rpoA, DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
nsh
Nostoc sphaeroides
Pathway
nsh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nsh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GXM_04704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsh03021
]
GXM_04704
03400 DNA repair and recombination proteins [BR:
nsh03400
]
GXM_04704
Enzymes [BR:
nsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GXM_04704
Transcription machinery [BR:
nsh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GXM_04704
DNA repair and recombination proteins [BR:
nsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GXM_04704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
KH_PARP14_8
HHH_2
Motif
Other DBs
NCBI-ProteinID:
QFS47214
UniProt:
A0A5P8W3M1
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All DBs
Position
Gxm1:complement(4276927..4277802)
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AA seq
291 aa
AA seq
DB search
MEPLERGQGTTVGNALRRVLLSNLEGTAVTAVRIAGVSHEFATVPGVREDVLEILMKMKE
VILKNYSSQPQIGRLLVTGPTTITAAHFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIEK
GKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEESRGEGLIPKDRLLLEVWTNGSI
SPQEALSSAAAILVDLFNPLKDISLEPTDTGSDIPDDPTAQIPIEELQLSVRAYNCLKRA
QVNSVADLLDYTQEDLLEIKNFGQKSAEEVVEALQRRLGITLPMERGSKHP
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
ttggaacctctagaacgcggtcaagggacaactgttggcaacgcactgcggcgggttttg
ctgtctaatctagaaggtacagcagttacagcagtgcggattgcaggcgtttcacatgaa
ttcgccacagttccgggcgtgcgggaagatgttctggaaatcctcatgaaaatgaaggaa
gttatcctcaaaaactattcttcgcagcctcagattgggagattactcgttaccggccca
acaacaatcactgcggcgcattttgatttgcccagtgaagtagaagtcattgatccgact
cagtatgtagccaccatcgctgagggtggaaagctggaaatggaatttcggatcgagaaa
ggcaaaggctatcgcactgtagagcgaggacgtgaggaagccacatcgttggatttcctc
caaatcgactcgatatttatgccagtgcgaaaagtcaactacagtgttgaagaatctcgt
ggggaaggcttgattccaaaagaccgactactgttggaagtttggacaaatggcagtatt
tcccctcaagaagcactatcttctgctgctgcgatcttggtagatttattcaacccgttg
aaagacatctccctagaaccaacagatacaggttccgatattccagacgatccaactgcc
cagatacccatcgaagagttgcaactttctgtgcgggcatataactgtctcaaacgggca
caagttaactctgtggcagatttgttggattatacccaagaagacctcttagaaattaag
aactttgggcagaaatcagcagaagaagtcgtggaagctttgcagcgacgcttgggcatc
accctgccaatggaaagaggctctaaacacccttaa
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