Neotabrizicola shimadae: JO391_01060
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Entry
JO391_01060 CDS
T08148
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nsm
Neotabrizicola shimadae
Pathway
nsm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nsm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JO391_01060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsm03021
]
JO391_01060 (rpoC)
03400 DNA repair and recombination proteins [BR:
nsm03400
]
JO391_01060 (rpoC)
Enzymes [BR:
nsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JO391_01060 (rpoC)
Transcription machinery [BR:
nsm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JO391_01060 (rpoC)
DNA repair and recombination proteins [BR:
nsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JO391_01060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QYZ70156
UniProt:
A0A8G0ZRL1
LinkDB
All DBs
Position
complement(215249..219493)
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTNNPFNPVAPVKTFDEIKISLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLESILYFEKYVVIEPGLTDLTYQQLMTEEEFLDAQDQYGADAFT
ANIGAEAIREMLAAIDLDATAEQLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGTNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYVTMERKGMVGEGMAFADIDEVEHAL
AAGAVHLHARIKARLRQVDDEGNIVWKRFDTTPGRLRLGNLLPLNAKAPFELVNRLLRKK
DVQTVIDTVYRYCGQKESVIFCDQIMGLGFREAFRAGISFGKDDMLIPDTKWTIVNEVRD
QVKEFEQQYMDGLITQGEKYNKVVDAWSKCSDKVAGEMMAEISAVRYDDAGAEKEPNSVY
MMSHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIIRVHDCGTDRAITAEPAVNDGEVVQTLAERILGRV
AADDILVPGSDEVIVARGEVVDERRADLVHTHGVQSARIRSPLTCEAEEGVCAMCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFLEASQEGKIEFRNAN
LLSNVNGEQIVIGRNMSIAIVDESGNDRAVHKLTYGAKVLVKEGQAVKRGTKLFEWDPYT
LPIIAEKAGVARFKDLISGLSVREETDEATGMTQKIVSDWRSAPKGGDLKPEVIVMDPAT
GEPVRGDNGNPITYPMSVDAILSVEDGQDIRPGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIIAEMDGYVRFGKDYKNKRRITVEPVDETLQAVEYMIPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILRIMGIEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKL
EILDSGDTTLLKGEQVEKIELDEENAKARARGMREAKAEPVLLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSRVKKIASDRDHHVIEARR
QEAETAAALAAPMDEVMEFDTDSGLVDTVESRDL
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaacccgttcaacccggttgcgcccgtcaagacctttgac
gagatcaagatctcgctggcttcgcccgagcggatcctgtcgtggtcctatggcgagatc
aagaagccggaaaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgc
gcccgtatcttcgggccgatcaaggactacgaatgcctctgcggcaaatacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgtggaagtcacgctgcagaaggtgcgc
cgcgaacgcatgggccacatcgaactggccgcgcccgtcgcccatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgtgacctcgagtcgatc
ctgtatttcgagaaatacgtcgtcatcgagccgggtctgaccgacctgacctatcagcag
ctgatgaccgaagaggaattcctcgacgcgcaggaccaatacggcgccgatgccttcacc
gcgaacatcggcgcggaagcgatccgcgagatgctggcggcgatcgacctcgacgccacc
gccgaacagctgcgtgaagagctgaaggaagccactggcgagctgaagccgaagaagatc
atcaagcggctgaagatcgtcgagtcgttcctggaatccggcaaccgcccggagtggatg
gtgctgaccgttcttccggtgatcccaccggaactgcgtccgttggtccccctggacggc
ggccgctttgcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaac
cgcctgaagcggctgatcgaactccgcgcgcccgatatcatagtgcgcaacgaaaagcgc
atgctgcaggaagccgtcgacgcgctgttcgacaacggccgccgcggtcgcgtcatcacg
ggcaccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgg
ttccgccagaacctgctgggcaagcgggtcgacttctcgggccgttcggtcatcgtgacc
gggccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctggaactgttc
aagccgttcatctactcgcggctggaagccaagggcctgtcctcgaccgtgaagcaggcc
aagaagctggtggaaaaggaacgccccgaggtctgggacatcctggatgaagtcatccgc
gaacacccggtccttctgaaccgcgcgccgactctgcaccgtctgggcatccaggccttc
gagccgatcctgatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctggaagcgcag
ctggaggcccgcgtcctgatgatgtccacgaacaacgtgctgtcgcccgccaacggcgcg
ccgatcatcgtgccgtcgcaggacatggttcttggcctttactacgtgaccatggaacgc
aagggcatggtcggcgaaggcatggcctttgccgatatcgacgaagtcgaacatgcgctg
gccgccggggccgtgcacctgcacgcccgcatcaaggcccgcctgcgccaggtcgacgac
gaaggcaacatcgtctggaagcgcttcgacaccacgcccggccgcctgcggcttggcaac
ctcctgccgctgaacgccaaggcgcccttcgaactggtcaaccgccttcttcgcaagaag
gacgtgcagaccgtcatcgacacagtctaccgctactgcggccagaaggaatcggtgatc
ttctgcgaccagatcatgggcctgggcttccgcgaggctttccgcgccggcatctcgttc
ggcaaggacgacatgctcatccccgacaccaagtggaccatcgtgaatgaggtccgcgac
caggtgaaggagttcgagcagcagtacatggacggcctgatcacccagggcgaaaagtac
aacaaggtcgtcgacgcctggtccaagtgctcggacaaggtggcgggcgagatgatggcc
gaaatctctgcggtccggtacgacgatgccggcgccgagaaggagccgaactcggtctac
atgatgtcccactcgggcgcgcggggttcgcccgcccagatgaagcagcttggcgggatg
cgcggcctgatggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgagtacttcaactcgacccacggcgcccggaagggcctc
gcggacactgcgttgaagacggcgaactccggctacctgacccgccgcctggtggacgtg
gcgcaggactgcatcatccgcgtgcatgactgcggcactgatcgtgccatcacggccgaa
cccgcggtcaacgacggcgaagtcgtccagaccctggccgagcgcatccttggtcgcgtt
gcggcggatgacatcctcgttccgggttcggatgaggtcatcgtcgcccgcggcgaagtg
gtcgacgaacgcagggccgacctcgtgcacacgcacggcgtacagtccgcgcgcatccgc
agcccgctgacctgcgaggccgaagaaggcgtctgcgccatgtgctatggtcgtgacctg
gcccgcggcacgctcgtcaatatcggggaagcggtcggcatcatcgccgcccagtccatc
ggcgagccgggcacgcagctgaccatgcgcaccttccacatcggcggcattgcccaaggc
ggccagcagtcgttcctggaagccagccaggaaggcaagatcgagttccgcaacgcgaac
ctgttgtccaacgtcaatggcgagcagatcgtgatcggccggaacatgtcgatcgccatc
gtggatgaatcgggcaatgaccgcgccgtccacaagctgacctacggcgccaaggtgctg
gtcaaggaaggccaggcggtcaagcgtggcaccaagctgttcgaatgggacccctacacc
ctgccgatcatcgccgaaaaggcgggggtcgcgcggttcaaggacctcatctcgggcctc
tcggtgcgcgaagagaccgatgaagccaccggcatgacgcagaagatcgtctccgactgg
cgctcggcgcccaagggcggcgacctgaagccggaagtgatcgtcatggaccccgctacg
ggcgagcccgtgcgtggcgacaatggcaacccgatcacctatccgatgtcggtggacgcg
atcctctccgtcgaagacggacaggacatccgccccggcgacgtggtggcgcgtatcccg
cgcgaaggtgccaagaccaaggacatcaccgggggtcttccccgcgtggcggaactgttc
gaagcccgtcgcccgaaggatcacgcgatcatcgcggaaatggacggctacgtccgcttc
ggcaaggactacaagaacaagcgccgcatcaccgtggagccggtcgatgagacgctgcag
gccgtcgaatacatgatccccaagggcaagcacattcctgtccaggaaggcgacttcgtc
cagaagggcgactacatcatggatggcaacccggctccgcacgacatcctgcggatcatg
gggatcgaggcgcttgccaactacatgatcgacgaagtgcaggacgtctatcgcctgcag
ggcgtgaagatcaacgacaagcacatcgaagtcatcgtccggcagatgctgcagaagctg
gaaatcctcgacagcggggacaccaccttgctgaagggcgaacaggtcgagaagatcgaa
ctggacgaggaaaacgccaaggcccgcgcccgcgggatgcgcgaggcgaaggccgagccg
gtgcttctgggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcctcc
ttccaggaaactacccgcgtgctgaccgaggcgtcggttcaaggcaagcgcgacaagctg
gtgggcctgaaggaaaacgtcatcgtcggccgccttatcccggcgggtaccggcggggcg
accagccgcgtgaagaagattgcctcggatcgcgatcaccacgtgatcgaggcgcgccgg
caagaggcggaaaccgccgctgcgctggccgccccgatggacgaggtgatggagttcgat
acggactcgggtctcgtggacaccgtcgaaagccgcgatctctga
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integrated database retrieval system
