Neotabrizicola shimadae: JO391_02755
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Entry
JO391_02755 CDS
T08148
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nsm
Neotabrizicola shimadae
Pathway
nsm03030
DNA replication
nsm03430
Mismatch repair
nsm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JO391_02755 (dnaE)
03430 Mismatch repair
JO391_02755 (dnaE)
03440 Homologous recombination
JO391_02755 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsm03032
]
JO391_02755 (dnaE)
03400 DNA repair and recombination proteins [BR:
nsm03400
]
JO391_02755 (dnaE)
Enzymes [BR:
nsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JO391_02755 (dnaE)
DNA replication proteins [BR:
nsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JO391_02755 (dnaE)
DNA repair and recombination proteins [BR:
nsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JO391_02755 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
QYZ70463
UniProt:
A0A8G0ZXD6
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All DBs
Position
584516..588004
Genome browser
AA seq
1162 aa
AA seq
DB search
MSDNAPRFIHLRVHTEHSLLEGAVPVKKLVKLCEAAKMPAVAVTDTNAMFAALEFSVTAL
GAGVQPIVGCQVSVAFDPAQPGEKPRMPAPVVLLAQDEAGYGNLMKLSSCLYVDKGGQLP
QVTLEELEAHADGLICLTGGAEGPVGRLIQGGQLPKARALVQRLAAAYPGRLYMELQRHP
GEGGRLTEGEQATERPFVEMAYDMGLPLVATNDVYFPKSEMYEAHDALICIAEGAYVDQQ
QPRRRLTPQHYFKSEAEMCALFADLPEALENTVEIARRCAFAAFKRKPILPKFADDEVEE
LRRQAWEGLERRLAVIPMAAPREVYEERLRFELSIIEKMKFPGYFLIVADFIKWAKQHDI
PVGPGRGSGAGSLVAYVLTITDLDPLRYALLFERFLNPERVSMPDFDIDFCMDRREEVIR
YVQGKYGREKVGQIITFGALLSKAAVRDVGRVLQLSYGQVDRLSKMIPVEGVKPVSITKA
LADEPRLREAAKEEVVGRLLSYAEQIEGLYRNASTHAAGVVIGDRPLDELVPLYQDPRSD
MPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIKGTGRALHQAADGRVLFEPKPGA
ENDIGHIPLDDKASYELYAAAKTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGP
MENIPTYCEVKNGLRDLESIHPTIDHILAETQGIIVYQEQVMQIAQVMAGYSLGGADLLR
RAMGKKIAEEMAKERPKFIEGCKATHGIDAKKAGEVFDLLEKFANYGFNKSHAAAYAVVS
YQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRTVAPSVNESLATFSVRDG
AVVYALGALKNVGVEAMKTIVEARGAKPFATLFDLARRVDLKKVGKRPLEMLARAGAFDC
LDANRARVFEALDALVGYSAAIHEARGSNQVSLFGEAGADIPEPRLPYRDDWLPVERLAQ
EHQAIGFYLSGHPLDDYMPSLKRKDVKTLTEVTQLAERGPLVAKMAGSVSARQERKSAKG
NRFAFVALSDPTGLYEVTVFSDVLEAARDHLEPGRNVVLTVEATLEGETLKLLARGAQPI
DAVAAEAGASPLRIHLNRPEAVASLAAILGRLEGKRRAPVTLCVADGEGREIDIALPQPY
PVTPQIKGALKAVQGVVLVEEI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaatgccccccgattcatccatctgcgtgtccataccgagcattcccttctg
gaaggtgcggtgccggtgaagaagctggtgaagctgtgcgaggcggcgaagatgccggcg
gtggcggtgaccgacaccaatgccatgttcgccgcgctggagttttccgtcacggccctg
ggggccggggtgcagccgatcgtgggctgccaggtctcggtggcctttgacccggcgcag
ccgggggagaagccccggatgccggcgccggtggttctgctggcgcaggacgaggcgggt
tacggcaacctgatgaagctgagcagctgcctatacgtggacaagggcggccagctgccg
caggtgacgctggaggagctggaggcgcatgccgacgggctgatctgcctgaccggcggg
gcggaggggccggtcgggcggctgatccaggggggccagttgccgaaagcgcgggcgctg
gtgcagcggctggcggcggcctatccggggcggctgtatatggagttgcagcgccatccg
ggcgagggcgggcggctgaccgagggcgagcaggcgaccgagcggccctttgtcgagatg
gcctatgacatgggcctgccgctggtggcgaccaacgacgtctatttccccaaatccgag
atgtacgaggcgcatgacgcgctgatctgcatcgcggaaggcgcctatgtggaccagcaa
caaccgcggcggcggctgacgccgcagcactatttcaagtccgaagccgagatgtgcgcg
ctgttcgccgatctgcctgaggcgctggaaaacacggtggaaatcgcccggcgctgtgcc
tttgccgccttcaagcgcaagccgatcctgccgaagtttgccgatgacgaggtggaggag
ttgcggcgccaggcctgggaggggctggagcgtcgtctggccgtgattcccatggcggcc
ccgcgcgaggtctatgaggagcggctgcgcttcgagctttcgatcatcgagaagatgaag
ttccccggctacttcctgattgtggccgacttcatcaaatgggccaagcagcacgacatt
cccgtcggaccgggccgggggtcgggcgcgggctcgctggtggcctatgtgctgacgatc
accgacctggacccgctgcgctatgccctgctgttcgaacgcttcctgaaccccgagcgg
gtgtcgatgcccgacttcgacatcgacttctgcatggaccggcgggaagaggtgatccgc
tatgtgcagggcaagtacgggcgcgagaaggtggggcagatcatcaccttcggcgcgctt
ctgtccaaggcggcggtgcgcgacgtggggcgcgtcttgcagctgagctatggccaggtg
gaccgtctgtcgaagatgatccctgtggaaggggtgaagccggtttccatcaccaaggcc
ttggccgacgagccgcgcctgcgcgaggccgcgaaggaagaggtggtggggcggcttctg
tcctatgccgagcagatcgaggggctgtaccgcaatgccagcacccatgccgccggcgtg
gtgatcggcgaccggccgctggacgagctggtgcccctgtaccaggacccgcggtcggac
atgcctgccacccagttcaacatgaaatgggttgaagcggcggggctggtgaagttcgac
ttcctgggcctgaagacgctgacggtgatccagaacgccatcgacctgatcaagggcacg
gggcgcgcgctgcaccaggcggcggacgggcgggtgctgttcgagccgaagccgggggcc
gagaacgacatcggccatatccctctggatgacaaggcgtcttacgagctttacgccgcg
gccaagacggtggcggtgttccaggtggaaagctcgggcatgatggatgcgctgcggcgc
atgaagcccacctgcatcgaggatatcgtggcgctggtggcgctgtaccgccccggcccg
atggagaacattcccacctattgcgaggtgaagaacgggctgcgggatctggagtcgatc
cacccgaccatcgaccatatcctggccgaaacccagggcatcatcgtctatcaggaacag
gtgatgcagatcgcgcaggtcatggcggggtacagccttggcggcgccgaccttctgcgc
cgcgccatgggcaagaagatcgccgaggaaatggcgaaggagcggcccaagttcattgaa
ggctgcaaggcgacccacggcatcgacgccaagaaggcgggcgaggtctttgaccttctg
gagaaattcgccaactacggcttcaacaagtcgcacgctgcggcctatgcggtggtgagc
taccagacggcctggctgaaggcgaaccatccggtcgagttcatggccgccgtgatgaac
tgcgatatccacctgaccgacaagctggccgtctacaagcgcgaggtggacaagctgggg
atccgcacggtggcgccttcggtcaacgagtctctggcgacgttttccgtgcgcgacggg
gcggtggtctatgcgcttggcgcgctgaagaacgtgggcgtcgaggcgatgaagaccatc
gtcgaggcgcggggggcgaagccctttgccacgctgttcgacctggcgcggcgggtggac
ctgaagaaggtgggcaagcggcccttggaaatgctcgcccgcgctggagcctttgactgc
ctggacgcgaaccgggcgcgggtcttcgaggcgctggatgcgctggtcggctactccgcc
gcgatccacgaggcgcgcgggtcgaaccaggtgtcgctgttcggcgaggcaggggccgac
attcccgagccgcggctgccctaccgcgacgactggctgccggtggagcggctggcacaa
gagcatcaggcgatcggcttctatctgtcggggcacccgctggacgactacatgccctcg
ctgaagcgcaaggatgtgaagacgctgaccgaggtgacgcaactggccgagcggggtccg
ctggtggcgaagatggccggatcggtgagcgcgcggcaggagcggaaatcggccaagggc
aaccgctttgccttcgtggcgctgtcggacccgaccgggctatatgaggtgacggtgttt
tctgacgtgctggaggcagcgcgcgatcacctggaaccgggccgcaacgtcgtgctgacg
gtcgaggcgacgctggagggcgagacgctgaagctgttggcgcggggcgcccagccgatt
gacgcggtggcggcggaggctggcgcttctcccctgcgcatccatctgaaccggcccgag
gcggtggcctcgctggcggcgattctgggcaggctggagggcaagcggcgcgcgccggtg
acgctgtgcgttgccgatggcgaagggcgcgaaatcgacatcgcgctgccccagccctat
ccggtgacgccgcagatcaagggcgcgctgaaggcggtgcagggcgtggtgctggtggag
gagatctga
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