Neotabrizicola shimadae: JO391_06110
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Entry
JO391_06110 CDS
T08148
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nsm
Neotabrizicola shimadae
Pathway
nsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JO391_06110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsm03400
]
JO391_06110 (mfd)
Enzymes [BR:
nsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JO391_06110 (mfd)
DNA repair and recombination proteins [BR:
nsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JO391_06110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
RecG_dom3_C
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYZ71080
UniProt:
A0A8G1ECX1
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All DBs
Position
1266167..1269616
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AA seq
1149 aa
AA seq
DB search
MATDRILLGGAPEGFDARLLARELAKGAAVIHVARDDKRMEAMRAALAVMAPSALVLDFP
AWDCLPYDRMSPNPAIVARRMATLAALAQGAVRGEFILLTTLSAATQRLPAREVLRAASF
SAGVGQRVDETALKGFLARMGFHPVATVAEPGDYAIRGGIIDLWPPGSRQPVRLDLFGDT
LDGIRRFDAETQRTTEKLSAIDLSPMSEVILDEAGITRFRQNYRVEFGAAGTSDPLYEAV
SAGRKHQGMEHWLPFFHDRLETLFDYLPDASVMLDDQIDAARLSRWEGIADSYDSRIEAM
TQKGRIDTVYKPVAPGLLYLDDAGWDAAVSGHRVIRLSSLPQSPGPGVLDAGGRIGRSFA
PERQQEKVSLFGALAAHVRELLEDRHVVIASWSEGARERLKGLLDDQGLAATKLVKDFRD
VPEIGRGGLYLMVWALEAGFTAPGLAVISEQDVLGDRLVGRPKRRRKAENFLREADALTP
GDLVVHVEHGVGRYLGLETITALGAPHECLALEYAESAKLYLPVENIELLSRYGHEEGLL
DRLGGGAWQAKKAKLKERIREIADRLMRVAAERLLRQAPVLEPPHQMWEAFCARFPWPET
DDQLSAISDVITDFEAGRPMDRLIVGDVGFGKTEVAMRAAFVAALSGMQVAVVCPTTLLA
RQHYRSFADRFRGFPVNVRQLSRFVGQKEANETRAGLAEGTVDICIGTHAILAKGVSFRN
LGLLIVDEEQHFGVGHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVD
RLAIRTYVSEFDSVTLREALLRERYRGGQSFFVVPRIADLPEIEDFLKSQVPEVSYVIAH
GQMPAGELDEKMNAFYDGKFDVLLSTTIVESGLDIPTANTMIVHRADMFGLGQLYQIRGR
VGRSKTRAYCYLTTKPRMALTPQATKRLRLLGSLDSLGAGFNLASHDLDLRGAGNLLGEE
QSGHIKEVGYELYQQMLEETISKLRSGEIGGLATVDDQWAPQLNLGVPVLIPDAYVPDLD
VRLGLYRRLSSLSTKVELEGFAAELIDRFGPLPKEVNTLLLVVRIKAMCRRAGISRLDAG
PRGATIMFHNDKFANPAGLVDFIKAEGQAAKITGNKIVLARDWKTEGDRIKGAYAIARDL
AEKVVKPKG
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgaccgtatccttcttggcggcgctccggagggattcgacgcccggcttctg
gcccgcgaactggcgaagggggctgccgtcatccatgtcgcccgcgatgacaagaggatg
gaggcgatgcgcgccgcgctggcggtcatggcaccctctgcgctggtcctcgatttcccg
gcctgggactgcctgccctatgatcggatgtcgcccaatccggccatcgtcgcccgccgc
atggccacgctggccgctctggcacagggcgcggtgcggggcgaattcatcctgctgacc
acgctgtcggccgccacgcagcgccttcccgcgcgcgaggtgttgcgcgcagcgtccttc
agcgccggggtcgggcagcgcgtggacgagacggcgctgaagggcttcctcgcccgcatg
ggctttcacccggtcgccaccgtggctgaacccggcgactatgcgatccgtggcggcatc
atcgacctctggccgccaggcagccgccagccagtgcggctggacctcttcggcgacacg
ttggacggcatccgtcgcttcgatgccgagacgcagcgcacgaccgaaaagctttccgcc
atcgacctttcgcccatgtcagaggtgatcctggacgaggccggcatcacccggttccgc
cagaactatcgcgtggagtttggcgccgcgggtacctccgatccgctgtacgaggccgtc
agcgccgggcgcaagcatcagggcatggaacactggctgccgttcttccatgatcggctt
gaaacgctgttcgattacctgcccgacgcctcggtcatgctggacgaccagatcgacgcc
gcccgcctgtcgcggtgggaggggatcgccgacagttatgactcgcgcatcgaggcgatg
acccagaagggccgcatcgacacggtgtacaagccggtggcgccgggccttctgtacctg
gacgatgccggctgggatgcggctgtgtcggggcaccgggtgatccgcctgtcttcgctg
ccccaatctcccggccccggcgtgctggatgccggcgggcggatcgggcgcagtttcgcg
ccggagcgtcagcaggaaaaggtcagccttttcggtgcgctggcggcccatgttcgtgaa
ctgctggaagaccgccacgtggtcatcgcctcttggtccgaaggcgctcgggaacggctg
aaggggctgctggacgatcagggcctggcggccacgaaactggtcaaggatttccgcgat
gtgcccgaaatcgggcgcggcgggctgtatctgatggtctgggcgctggaggcgggcttc
accgcgcccggccttgccgtcatctctgaacaggacgttctgggcgaccgtctggttggc
cgccccaagcgccgccgcaaggccgagaacttcctgcgcgaggccgacgccctgacgcct
ggcgatctggtggtgcatgtcgaacatggcgtcggccgctacctggggctggagaccatc
accgcccttggcgcgccgcatgaatgcctggcgctggaatatgctgaaagcgcaaagctt
tacctgccagtcgagaacatcgaactgctcagccgctatggccatgaagaggggctcctg
gaccgcctgggcggcggggcgtggcaggccaagaaggccaagctcaaggaacgaatccgc
gagatcgccgaccgtctgatgcgcgttgcggccgaacgccttctgcgccaggccccggtt
ctggaaccgccccaccagatgtgggaggccttctgcgcccgattcccctggccagaaacc
gacgaccagctttcggccatctcggacgtcatcaccgatttcgaggccggccgcccgatg
gaccggctcatcgtgggcgacgtgggcttcggcaagaccgaagtggcgatgcgcgccgcc
ttcgtggcggcgctgtcggggatgcaggtggcggtggtctgccctaccacgctgctggcc
cgccagcattaccgcagcttcgccgaccgtttccgcggcttcccggtcaacgtccggcaa
ctgtcgcgcttcgtcggccagaaagaggcgaacgaaacgcgcgccggcctggccgaaggc
acggtggacatctgcatcggcacccatgcgatccttgccaagggcgtgagcttccgcaac
ctcggcctcttgatcgttgacgaggaacagcatttcggcgtcggccacaaggaacggctg
aaggaaatgcggtcggaagtccatgtgctgaccctcaccgccacgccgatcccgcgcacc
ctgcagctatccctcaccggcgttcgcgacctgtcgatcatcgccaccccgccggtggat
cggcttgcaatacgaacatatgtttcggaattcgactccgtcaccctgcgcgaggcgctg
ttgcgcgaacgctaccgcggcgggcagtccttctttgtcgtgccccgcatcgccgacctg
cccgagatcgaggatttcctgaagtcccaggtgcccgaagtcagctatgtcatcgcgcat
ggtcagatgcccgcgggcgagctggacgagaagatgaacgccttctacgacggcaagttc
gacgtgcttctgtccaccaccatcgtcgaatccggtctggatatccccaccgccaacacc
atgatcgttcaccgcgccgatatgttcgggctgggtcagctgtaccagatccgcggccgc
gtcggccggtccaagacgcgggcctactgctacctgacgacaaagccccgcatggcgctg
accccgcaggccaccaagcgcctgcgccttctgggcagcctcgattcgcttggcgcgggc
ttcaacctggcctcccacgacctggacctgcgcggcgcgggcaaccttctgggcgaggaa
cagtcgggccacatcaaggaagtgggctacgagctttaccagcagatgctggaggaaacg
atcagcaagctccgctcgggcgagatcggcggcctggccacggtcgatgaccaatgggcg
ccgcagctgaacctgggcgtgcctgtcctgatccccgacgcctacgtgcccgacctcgac
gtgcgcctcggcctctaccgccgcctctcctcgctctccaccaaggtggaactggaaggc
ttcgccgccgaactgatcgaccgcttcggccccttgccgaaagaggtgaacacacttctt
ctcgtcgtgcgcatcaaggcgatgtgccgccgcgccggcatctcgcggctggatgcaggg
ccgcgtggcgccacaatcatgttccacaacgacaagttcgccaacccggcggggctggtg
gatttcatcaaggccgagggacaggccgccaagatcaccggcaacaagatcgtgctggcc
cgcgactggaagacggaaggcgaccgcatcaagggggcttatgcgatcgcccgcgacctt
gccgagaaggtggtcaagcccaagggctag
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