Neotabrizicola shimadae: JO391_11850
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Entry
JO391_11850 CDS
T08148
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nsm
Neotabrizicola shimadae
Pathway
nsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO391_11850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsm03019
]
JO391_11850
Enzymes [BR:
nsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JO391_11850
Messenger RNA biogenesis [BR:
nsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JO391_11850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
PG_binding_2
Motif
Other DBs
NCBI-ProteinID:
QYZ68476
UniProt:
A0A8G0ZN91
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All DBs
Position
2453158..2454546
Genome browser
AA seq
462 aa
AA seq
DB search
MTAFADLGLSPRLLKALETAGLDRPTPIQAQSIPHVMAGRDLMGLAQTGTGKTLAFGLPL
LHRILDLGHPPGPRHVRALILAPTRELVLQISDTLTTFTKGTAVKVTTVVGGASINKQAE
RLARGTDVLVATPGRLIDLIERGDVNLEKCAYLVLDEADHMLDMGFIHSLRKIAKFIPLK
RQTLMFSATMPNDIEEVSETYLRDPVRVQVAPPGKPVERINQGIHFIPNGDKAKLLESYL
QKHPDEQALVFGRTKHGADKLAKLLASWGFKVGAIHGNRSQNQREAMLSAFRAGEVMVLV
ATDVAARGLDIPTVRHVYNYDLPNVPENYVHRIGRTARAGAEGTAVAFCAPAEMADLAAI
EKVLKKPIPVIGGAPWANVGAPPPKPAQRKGPPRPARPGGPAPQGAKPAAPQGAKPAAKP
RPAAAPKPQGGQAAPQRAPGGGKPGGSKPGGGRPRGASRSPR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctttcgccgaccttggcctttccccccgcctgctcaaggcgctggagacggcc
ggcctcgaccggcccacgccgatccaggcccagtcgatcccgcatgtcatggcggggcgc
gacctcatgggcctcgcacagacgggcaccggcaagacgctggccttcggcctgccgctc
ctgcaccgcatcctcgatctcggccacccgccggggccgcgccatgtgcgcgcgctgatc
ctcgcccccacgcgcgaacttgtgctgcagatctccgacacgctgaccaccttcaccaag
ggcacggcggtcaaggtcaccaccgtcgtcggcggcgcctcgatcaacaagcaggccgaa
cggctcgcccgcggcaccgatgtgctggtggccacccccggtcgcctgatcgacctgatc
gaacgcggcgacgtgaacctggaaaaatgcgcctatctggtgctcgacgaagccgaccac
atgcttgacatgggcttcatccattcgctccggaagatcgccaagttcatcccgctcaag
cgccagacgctgatgttctcggccaccatgccgaacgacatcgaagaggtctcggaaacc
tacctgcgcgacccggtccgcgtgcaggtggccccgcccggcaagccggtggaacgcatc
aaccagggcatccacttcatcccgaacggggacaaggcgaagcttctggaaagctacctg
caaaagcaccccgacgagcaggcgctggtcttcggccgcaccaagcacggcgccgacaaa
ctggcgaaactgctggccagctggggcttcaaggtcggcgccatccacggcaaccgcagc
cagaaccagcgcgaggcgatgctgtcggccttccgcgccggcgaggtcatggtgcttgtg
gccacagatgtggcagcgcgcgggctcgacatcccgaccgtgcgccatgtctacaattac
gacctgccgaacgtgccggaaaactatgtccaccgcatcggccgcaccgcgcgtgcgggg
gccgaaggcacggctgtcgccttctgcgccccggcagaaatggccgatctcgccgccatc
gagaaggtgctgaagaagccgatcccggtcatcggcggtgccccctgggccaatgtcggc
gccccgccgcccaagcccgcacaacgcaagggcccgccgcggccggcccgtccgggcgga
cccgccccccaaggggcaaagcccgccgccccgcagggcgccaagcccgccgccaagccc
cgccccgccgccgcgccgaaaccgcaaggcggccaggccgcgccgcagcgcgcgcccggt
ggtggcaagcccggtggtagcaagcccggcggcggtcgcccgcgcggggctagccggtct
ccccgttga
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