Neotabrizicola shimadae: JO391_19015
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Entry
JO391_19015 CDS
T08148
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nsm
Neotabrizicola shimadae
Pathway
nsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO391_19015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsm03019
]
JO391_19015
03009 Ribosome biogenesis [BR:
nsm03009
]
JO391_19015
Enzymes [BR:
nsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JO391_19015
Messenger RNA biogenesis [BR:
nsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JO391_19015
Ribosome biogenesis [BR:
nsm03009
]
Prokaryotic type
rRNA helicases
JO391_19015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYZ69760
UniProt:
A0A8G1EBL8
LinkDB
All DBs
Position
complement(3919258..3921645)
Genome browser
AA seq
795 aa
AA seq
DB search
MTEHSLPAALAAALATKGYSSLTSVQEAVLVAEAAGRDLLVSAQTGSGKTVAFGLAIAPE
VMDGTDRLLFAAEPLALIVAPTRELALQVRREFEWLYADAGATIASCVGGMDFRNERRTL
ERGAHIVVGTPGRLRDHIERGSLNLSAIRAVVLDEADEMLDLGFREDLEFILSAMPEGKR
TLMFSATVPAEIAELATTFQTDALRVVAQGEARQHVDIEYRAYSVAPRDKEHAIFNILRF
HEARTAIVFAKTRANVNHLFARMGNRGFQVVALSGELSQAERSHALQALRDGRARVCIAT
DVAARGIDLPGLELVIHADLPGSSETLLHRSGRTGRAGSKGVSALVVTPAEFKKAHRLLQ
GAKVVAEWGAPPSADDVLARDEVRMMEDPALAEGPGEELELNAKLIERFGAETLAGAFVR
MWRAGRSAPEEIGEVSTPAAPAAPRPRGEFGEAVWYELNVGHTGRAEARWLLPKICDAGG
IAKDGIGAIRVQQDRSFVQISAPLAGRFGETTDIDTGLTMTRLAGEPDFGPARGAPRAPS
KYTPRPPREEGEYRPRAAEGASERTERKTYTPRPLREEDGEGRKPYAPRPKRDDDGERRS
YTPREDGERKPYAPRPKRDDGDAPRKPYAPRPAREEGGERKPWTPRPKDDDAPRKPYAAR
SDDAPRKSYGARSDDAPRKPYTPRPTQDGDAPRKPRWKDGDRPEGDKRLARSEGFKSHSD
KPAGKSWGDKPAKGAPKSAGFKSHGGAAKSTGFKSHGSKSAKPGGSDVPSRKPAAPKTDA
RDTSKRFVPPKKPKA
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacactcgctgcccgcggcccttgccgcggcgctggccacgaaaggctattcc
tccctcacctcggtgcaggaggccgttctcgttgccgaagccgccgggcgcgaccttctg
gtctcagcccagaccgggtcgggcaagacggtggccttcggccttgccatcgctcccgaa
gtgatggacggcaccgaccgcctgctcttcgccgccgaaccgctggcgctgatcgtcgcc
cccacccgcgaactcgcccttcaggtgcggcgcgaattcgaatggctctacgccgatgcc
ggcgccaccatcgcctcctgcgtcggcggcatggacttccgcaacgaacgccgcacgctg
gaacgcggcgcgcatatcgtcgtgggcaccccagggcggctccgcgaccatatcgagcgc
ggctcgctgaacctgtcggccatccgcgccgtggtgctggacgaggcagacgagatgctg
gacctcggcttccgcgaggatctggagttcatcctgtcggccatgcccgagggcaagcgc
acgctgatgttctctgccaccgtgccggccgagatcgcggaactcgcaaccaccttccag
accgatgcgctgcgcgtggtggcccagggcgaggcccgccagcatgtcgacatcgaatac
cgcgcctattccgtcgccccgcgcgacaaggaacacgcgatcttcaacatcctgcgcttt
cacgaggcacgcaccgccatcgtcttcgccaagacgcgggccaatgtgaaccacctcttc
gcccgcatgggcaaccgcggcttccaggtcgtggcgctgtcgggcgaactcagccaggcc
gaacgcagccacgcgctgcaggcgctgcgcgacgggcgcgcacgggtctgcatcgccact
gacgtggccgcccgcggcatcgacctgccgggcctggaactggtgatccacgccgatctg
cccggctcgtccgaaaccctgctccaccgctcgggccgcaccggccgcgccgggtccaag
ggcgtgtcggcgctggtcgtcaccccggccgaattcaagaaggcacaccgtctgctgcag
ggcgcaaaggtcgttgcagaatggggcgcgccgccctcggccgatgacgtgctggcgcgc
gacgaggtccgcatgatggaagacccggccctggccgaaggtccgggcgaagaactggaa
ctgaacgcgaagctgatcgagcgcttcggcgccgagacgctggccggcgccttcgtgcgc
atgtggcgcgcgggccgctccgcgcccgaggaaatcggcgaggtctcgacccccgccgcg
cccgccgccccccgcccgcgcggcgaattcggcgaggccgtctggtacgagctgaacgtc
ggtcacaccggccgggccgaagcgcgctggcttctgccgaaaatctgcgatgccggcggc
atcgccaaggatggcatcggcgccatccgcgtccagcaggaccgcagcttcgtgcagatc
tctgcccccctcgccggccgcttcggcgagacgaccgacatcgacacgggcctgaccatg
acccgcctggccggcgagcccgatttcggccccgcccgcggcgccccgcgtgcgccgtcg
aaatacacgccccgcccgccgcgcgaagagggcgaataccgcccgcgtgcggccgaaggg
gcaagcgagcggaccgaacgcaagacctacacgccgcgcccgctgcgcgaagaggatggc
gaaggtcgcaagccctacgccccccgccccaagcgcgacgatgacggcgaacgccgctcc
tacacgccgcgcgaagacggcgagcgcaaaccctacgcgccgcgccccaagcgggacgac
ggtgacgcgccgcgcaagccctacgctccgcgtcccgcacgggaagaaggcggcgagcgc
aagccctggacgccccgtccaaaggacgacgacgccccgcgcaaaccctatgccgcccgc
tcggacgatgccccgcgcaagagctatggcgcccggtccgacgacgcgccgcgcaagccc
tacaccccgcgaccgacccaggacggcgatgccccgcgcaagccgcgctggaaggatggc
gaccgccccgaaggcgacaagcgcctcgcccgttccgaggggttcaagtcccacagcgac
aagccggcgggcaagtcctggggcgacaagcccgcgaagggcgcgccgaaatcggcgggc
ttcaagtcccatggcggcgcggccaaatcgaccgggttcaagtcgcacggctcgaaatcg
gccaagcccggcggctctgacgtgccgtcccgcaagcctgccgcgccaaagaccgatgcg
cgcgacacctccaagcggttcgtgccgccaaagaagcccaaggcgtga
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