Neotabrizicola shimadae: JO391_19360
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Entry
JO391_19360 CDS
T08148
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nsm
Neotabrizicola shimadae
Pathway
nsm03030
DNA replication
nsm03430
Mismatch repair
nsm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JO391_19360
03430 Mismatch repair
JO391_19360
03440 Homologous recombination
JO391_19360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsm03032
]
JO391_19360
03400 DNA repair and recombination proteins [BR:
nsm03400
]
JO391_19360
Enzymes [BR:
nsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JO391_19360
DNA replication proteins [BR:
nsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JO391_19360
DNA repair and recombination proteins [BR:
nsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JO391_19360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS_8
PAS
PAS_4
DNA_pol_A_exo1
DEDDh_C
PAS_9
Motif
Other DBs
NCBI-ProteinID:
QYZ69825
UniProt:
A0A8G0ZW85
LinkDB
All DBs
Position
3995365..3997431
Genome browser
AA seq
688 aa
AA seq
DB search
MIERLGLRLRVLLIFAGLLAGALAALAGGLWLGWSRQAGAGVVPTLELGGIAAGLVIAGL
VVGVWYLFDLNVARPIDALASALRARAHADVASEMDGEIARYLGDLAPAASAAAQRLAET
RNALAEAVARETTRLADEKARLETLLSDAPVGVVLCTGAHRLVFYNSQAVDLLGTGAAPG
LERNLFDYLHAGPIRLAHRRLIEGGEPDAASDLLCTTVAGARVLAARMRLLDEGGAEPGY
VLTLRDVTSDLAALASREALLAEMLDRMRRPAANLQTLLQVVPEGEALPPDLGAAVRQEV
AGLAGAVRDLGARHEAGRSEGWPVAFVRGADLVDGLRARIAAAGLPVMAEAAELLLRCNG
FELIALMSRLAGHVAAAGLATGFAVSLDEEEGGAMLRLSWEGAALPVGRLDRWLAEPVDP
GGLEVTGLAILASHATEAWPESHGGRACICLPIRQARRAGRRPKPIARAVVYDFDLLSKV
RNEKVADSRLEDLTYVVFDSETTGLMPQQDEMVQLAAVRIVNGRRVEGEIFDTLVNPGRP
IPPASTEVHGISDAMVADAPGVAEVVRRFHAFAEGAVLIAHNAPFDMEFLRRAEFAIGKR
FDNPILDTVLLSAVVYGQTEVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLVQI
LKARGIGTFGEVLTEVRRHGRLMKDLNG
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcggcttggcctgcgcctgagggtgcttctgatctttgcgggccttctggcc
ggtgccctggcggccctggcgggcgggctgtggcttggctggtccaggcaggccggggcc
ggcgtggtgccgacgctggagctggggggaatcgccgcggggctggtcatcgcggggctg
gtggtcggggtctggtatctgttcgacctgaacgtggcgcggccgatcgacgccctggcc
tcggccctgcgtgcccgcgcccatgccgatgtggccagtgagatggatggcgagatcgcg
cgctatctcggcgacctggccccggcggccagtgcggccgcgcagcgcctggccgagaca
cgcaatgcactggccgaggcggtggcgcgcgagacgacgcggctggccgacgagaaggcg
cgactggagacgctgctttcggatgcgccggtgggcgtggtgctttgcaccggggcgcat
cggctggtgttctacaacagccaggcggtcgatctgctgggcaccggggcggcgccgggg
ctggagcgcaacctgttcgattacctgcacgccgggccgatccggctggcgcaccggcgc
ctgatcgaggggggcgagcccgacgccgcctcggacctgctgtgcaccacggtggccggg
gcgcgggtgctggcggcgcggatgcggctgctggacgagggcggggcggagccgggctat
gtgttgacgctgcgcgacgtgacctcggacctggcggcgctggccagccgcgaggcgctg
ctggccgagatgctggaccggatgcggcggccggctgcgaacctccagacgctgttgcag
gtggtgcccgagggcgaggcgctgccgcccgacctgggggcggcggtccggcaggaggtg
gccgggctggcgggggcggtgcgagacctgggtgcgcggcacgaggcggggcgcagcgag
ggctggccggttgcctttgtgcggggcgccgatctggtggatggcctgcgcgcccggatc
gcggctgccggcctgccggtgatggcagaggcggccgagcttctgttgcggtgcaacggg
ttcgagctgatcgcgctcatgtcgcggctcgcggggcatgtggcggcggcggggctggcc
acgggctttgccgtaagcctggacgaggaagaaggcggcgcgatgctgcggctttcctgg
gagggggcggcgctgccggtggggcggctggaccgctggctggccgagccggtcgatccc
ggcgggctggaggttacggggctggcgatcctggcaagccacgcgacagaggcctggccg
gagagccatgggggacgcgcctgcatctgtctgccgatccgccaggcccgccgcgcgggg
cggcggccgaagccgattgcccgcgcggtggtctatgatttcgaccttctgtccaaggtc
cgcaacgagaaggtggcggacagccggctggaggacctgacctatgtggtcttcgacagc
gagacgaccgggctgatgccgcagcaggacgagatggtccagctcgcggcggtgcggatc
gtgaacgggcggcgggtcgagggggagatcttcgacacgctggtgaaccctggccggccg
atcccgccggcctcgaccgaggtgcatggcatctcggatgccatggtggcggatgcgccg
ggggtggccgaggtggtgcggcggttccatgccttcgccgagggagcggttctgattgcc
cacaatgcccccttcgacatggagttcctgaggcgggcggagtttgccatcggcaagcgg
ttcgacaatccgatcctggacacggtgcttctttcggcggtggtctatggccagaccgag
gttcattcgctggacgcattgacccaccggctggggatcaccatccccgaggaggcgcgg
catacggccatcggggatacggtggccacggcggatgccttcctgaagttggtccagatc
ctgaaggcgcgggggatcggaacctttggcgaggtcctgaccgaggtgcgccggcatggc
cggttgatgaaggatctgaacggctga
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