Nocardioides seonyuensis: EXE58_01625
Help
Entry
EXE58_01625 CDS
T06627
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nsn
Nocardioides seonyuensis
Pathway
nsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXE58_01625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsn03019
]
EXE58_01625
03009 Ribosome biogenesis [BR:
nsn03009
]
EXE58_01625
Enzymes [BR:
nsn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXE58_01625
Messenger RNA biogenesis [BR:
nsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXE58_01625
Ribosome biogenesis [BR:
nsn03009
]
Prokaryotic type
rRNA processing factors
EXE58_01625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Babuvirus_MP
Motif
Other DBs
NCBI-ProteinID:
QBX54297
UniProt:
A0A4P7IE92
LinkDB
All DBs
Position
complement(334790..337801)
Genome browser
AA seq
1003 aa
AA seq
DB search
MLDEDQPGNSTENASGEGGTTEAAPAAPDAPAKPVVKKTTRKAPAKRTAKKAAAPAPAPE
AVPDAAAPEEQSQATAPEKPVVKKTTRKAPAKRTAKKAAPATDTAADSAQDTLPEMSAEA
EPTPRKSASGRATKKATAPRKRAASKPEADVPLEVEAGAEDAPLETPSAGVGAVLFQAPD
ATKAPVRRSRKKAAAVPPVEDAEDTADDAADDAPVEVAGAAEAEVAQAATDEVTDEESAE
DAAEEGAATRRRRRRGGRRRRKPGDGAADQEGNGDDEQPADVDDDSTAESPSGEGKDDDQ
GGEGEPSSRRRRRRRRTGEEGGGDEGPNTVTRVRKSRTGDDQITAVSGSTRLEAKKQRRR
EGREAGRRRAPIVSEAEFLARRESVDRTMVIRQRQDLTQIAVLEDKVLVEHYVARESQTS
LIGNIYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVNWSALGHKEGQARKIESVLQSGQ
SVLVQVTKDPVGHKGARLTSQISLAGRFLVYVPDGTTSGISRKLPDTERNRLKNLLKEIV
PDTAGVIVRTAAEGASEEELTRDVERLKARWEDVEKKSKGSAPQLLYGEPDLTLKVVRDL
FTEDFAKLVIEGDDAWATVHDYVEYMAPDLAERMEKFERGPQEKDVFAVHRIDEQIHKGL
DRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRD
IGGIIVIDFIDMVLESNRDLVVRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGLLE
AFSENCEHCHGRGVVIKDAPVEPSKSDDEGRRSNRRKGRKGDSDDNGSSDNESGKDRSGR
GSGRGGRGSSEPAAQTPPSPKDVAAMARPDKPVSDAAESGDTTDETTPTRQPEPAPEPVV
PDAAPEQSEPVVPDAAPEPVEQVEPPASPEPEPTKPAVVTRTRRRAASRPAGPPELVPVG
VAGSSPTTGQVEPGTATVEPGVAGDDAAPVEHVPIKKKGPRKR
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgaggaccagcccggcaacagcaccgagaacgccagcggcgaaggcggcacc
accgaggcggcgcctgccgcgccggacgctccggcgaagccggtggtgaagaagaccacc
cgcaaggcgccggccaagcgcactgccaagaaggcggcggctcccgcgccggccccggag
gcggtgcccgacgctgctgcgcctgaggagcagtcccaggcgactgcgccggagaagccg
gtggtgaagaagacgacccgcaaggctcctgccaagcgcaccgccaagaaggcggctccc
gccaccgacacagcggccgactccgctcaggacacgctgccggagatgtcggcagaagcc
gagccgacgcccaggaagtcggcgtccggccgggccacgaagaaggcgaccgccccgcgc
aagagggcagcgtccaagccggaggccgatgtccccctcgaggtcgaggcaggtgctgag
gacgcgccgctggagacaccgtcggcgggcgtgggtgccgtgctcttccaggctcccgac
gccaccaaggcgccggttcgccgctcgcgcaagaaggcggcggccgtgccgccggtcgag
gacgccgaggacactgctgacgacgctgcggacgacgcacccgtcgaggtcgcgggagcg
gctgaagccgaggtcgcgcaggccgccaccgacgaggtcaccgacgaggagtccgccgag
gacgctgccgaggagggcgctgccacgcgccgccgccggcgtcgtggcggtcgccgccgc
cgcaagccgggcgacggcgcggccgaccaggagggcaacggcgacgacgagcagcccgct
gacgtcgacgacgactcgactgcagagagccccagcggcgagggcaaggacgacgaccag
ggcggcgagggggagccctcgtcgcgccgtcgtcgccgtcgtcgccgcaccggcgaggag
ggtggcggtgacgagggtcccaacaccgtgacccgcgtccggaagtcgcgcactggtgac
gaccagatcaccgctgtctccggctcgacccgcctggaggccaagaagcagcgtcgccgc
gagggtcgcgaggcgggccgccgacgcgcaccgatcgtcagcgaggccgagttcctcgcc
cgccgcgagtcggtggaccggacgatggtcatccgccagcgccaggacctcacccagatc
gcggtgctcgaggacaaggtgctcgtggagcactacgtcgcccgggagtcgcagacctcg
ttgatcggcaacatctacctcggccgggtccagaacgtgctcccctccatggaggcggcc
ttcatcgacatcggcaaggggcgcaacgccgtcctctacgccggtgaggtcaactggtcg
gcgctggggcacaaggagggccaggcgcgcaagatcgagtcggtgctccagagcggtcag
tcggtcctcgtccaggtcaccaaggacccggtcgggcacaagggcgcgcgcctgaccagc
cagatcagccttgccggtcgattcctcgtctacgtcccggacgggacgacgtccgggatc
tcgcgcaagctgcccgacaccgagcgcaaccggctcaagaacctcctcaaggagatcgtc
cccgacacggccggggtcatcgtccggactgccgccgagggcgccagcgaggaggagctg
acccgcgacgtcgagcggctcaaggcccgctgggaggacgtcgagaagaagtcgaagggg
agcgcgccgcagctgctgtacggcgagccggacctgacgctcaaggtcgtgcgggacctc
ttcaccgaggacttcgccaagctggtcatcgagggtgacgacgcgtgggccaccgtccac
gactacgtcgagtacatggccccggacctggccgagcgcatggagaagttcgagcgcggc
ccgcaggagaaggacgtcttcgccgtccaccgcatcgacgagcagatccacaagggcctg
gaccgcaaggtgtggctcccgtcgggcggttccctgatcatcgaccgcaccgaggcgatg
accgtcgtcgacgtcaacaccggcaagttcaccggctccgggggcaacctcgaggagacg
gtcaccaagaacaacctcgaggccgccgaggagatcgtgcgccagctccgcctgcgcgac
atcggcggcatcatcgtcatcgacttcatcgacatggtcctggagtccaaccgcgacctc
gtcgtacgacgcctcgtcgagtgcctcggacgggaccggacgcgccaccaggtggccgag
gtcacctccctggggttggtgcagatgacgcgcaagcggatcggcaccggcctcctggag
gcgttcagcgagaactgcgagcactgccacggtcgcggtgtggtcatcaaggacgctccc
gtcgagccctcgaagtccgacgacgagggccggcgcagcaatcgccgcaagggacgcaag
ggcgacagcgacgacaacggcagcagcgacaacgagtcgggaaaagaccgctccggccgc
ggctccgggcgtggtggtcgcggttcctcggagcccgccgcgcagacgccgccctctccc
aaggacgtcgcggccatggctcgcccggacaagcccgtgagcgacgcggctgagtcgggc
gacaccaccgacgagaccacgccgacccgccagccggagccggctcccgagcccgtcgtg
cctgacgcggcgcccgagcagtccgagcctgtcgtgcctgacgcggcgcccgagcctgtc
gagcaggtcgagccgcccgcatcccccgagcccgagcccacgaagccggccgtggtgacc
cggacccgcaggcgggcggccagccgtccggccggccctccggagctggtgcccgtcggg
gtcgccggaagcagtccgacgactggccaggtcgagccgggcacggccacggtcgagccc
ggcgtcgccggtgacgacgccgcgccggtcgagcacgtcccgatcaagaagaaggggccg
cgcaagcgctga
DBGET
integrated database retrieval system
