Nocardioides seonyuensis: EXE58_04745
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Entry
EXE58_04745 CDS
T06627
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nsn
Nocardioides seonyuensis
Pathway
nsn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nsn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EXE58_04745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsn03021
]
EXE58_04745
03400 DNA repair and recombination proteins [BR:
nsn03400
]
EXE58_04745
Enzymes [BR:
nsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EXE58_04745
Transcription machinery [BR:
nsn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EXE58_04745
DNA repair and recombination proteins [BR:
nsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EXE58_04745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QBX54840
UniProt:
A0A4P7IDS0
LinkDB
All DBs
Position
complement(962011..965886)
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNFFDQLQIGLATADEIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDMETLENKVGLERERLEKRRDLAVEDRAKKEEED
LAALEAEGAKSDVKRKVRDAAERERTQIRDRSNREIARLEEVWETFKSLKVQELLGDEML
YREMKNWFGKYFEGHMGATAIQKRLQDFDVNAEVESLRDTIANGKGQKKVRALKRLKVVD
AFRKTGNQPIGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPSQDMIIGLFWLTTDREDQVGEGR
VFSTPSEAIMAFDRGEITLQSKVRIRLDDIIPPLDLELGSDWEERTAIILETTLGRVFFN
DTLPADYPFVNEEVGKRRLGAIVNDLAERYTKVEVAASLDALKDAGFHWATRSGVTVSID
DVTTPDSKAAILEDYEKQAEKVQKNYERGVMTDDERRQELIELWTQAAADVGKAMEANFD
RSNPIYMMVDSGASGNMNQIRQVAAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKLIGERLEDGTVVKHE
HVETSAYARAAAVEITHPESGEVLAAAGEDLGDVKIGELVAAGVVEVKVRSVLTCDAKTG
TCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRV
VELFEARSPKGRTPISEAAGRVEIEETDKARVVKVTPDDGSEVLEIPVSKRSRLNVEDGQ
HIEVGHHITSGTPDPQDVLRILGVRKAQEHLVDEVQEVYRSQGVSIHDKHIEIIVRQMLR
RVTVIESGATNLLPSDLVDRVRFEEENRRVVSEGEKPASGRPVLMGITKASLATESWLSA
ASFQETTRVLTDAAINGRSDSLRGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARAAAY
SVTGYDSYDYDFGPSSQAVALDDFDFGSYQN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtgaacttcttcgaccagcttcagatcggcctggccaccgcggacgagatc
cgtacgtggagccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctccaaggtgcgtcgcgagcgcatgggccacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggcgtcccctcgcggctgggctacctgctcgacctc
gctccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctccgtcgac
gaggacgcgcgccaccgcgacatggagaccttggagaacaaggtcggcctggagcgcgag
cgcctcgagaagcgtcgcgacctcgctgtcgaggaccgcgccaagaaggaggaggaggac
ctcgccgccctcgaggcggagggtgccaagtccgacgtcaagcgcaaggtccgtgacgcc
gccgagcgtgagcgcacgcagatccgcgaccgcagcaaccgcgagatcgcccgtctcgag
gaggtctgggagaccttcaagtcgctcaaggtccaggagctgctcggcgacgagatgctc
taccgcgagatgaagaactggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcggctccaggacttcgacgtcaacgccgaggtggagtcgctgcgcgacacc
atcgccaacggcaagggccagaagaaggtccgcgccctcaagcgcctcaaggtcgtcgac
gcgttccgcaagaccggcaaccagccgatcggcatggtcctcgacgccgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgccacctccgacctc
aacgacctctaccgccgggtcatcaaccgcaacaaccgcctcaagcgactgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggcggtcgacagc
ctcttcgacaacggccgtcgcggccgccccgtcacaggtccgggcaaccgtccgttgaag
tcgctgtccgacatgctcaagggcaagcaggggcgcttccgccagaacctcctcggcaag
cgcgtggactactcgggccgctcggtcatcgtgtcgggtccgcagctcaagctgcaccag
tgcggactgcccaagcagatggcgctcgagctcttcaagcccttcgtcatgaagcggctc
gtcgacctctcgcacgcccagaacatcaagtccgccaagcgcatggtcgagcgggcacgt
ccggtggtgtgggacgtcctggaagaggtcatcaccgagcaccccgtgctcctcaaccgt
gctcccaccctgcaccgactcggcatccaggccttcgagccgcagctgatcgagggcaag
gccatccagatccacccgctggtgtgcggcgcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgcccctgtcggcggaggcccaggccgaggcgcgcatcctgatgctc
tcgaccaacaacatcctcaagccgtccgacggccgtccggtgaccatgccctcgcaggac
atgatcatcggcctgttctggctcacgaccgaccgtgaggaccaggtcggcgagggtcgc
gtgttctccacgccgtccgaggccatcatggccttcgaccggggcgagatcaccctgcag
agcaaggtgcgcatccggctcgacgacatcatcccgccgctggacctcgagctgggcagc
gactgggaggagcgcaccgcgatcatcctcgagacgacgctgggccgcgtgttcttcaac
gacacgctcccggccgactaccccttcgtgaacgaggaggtcggcaagcgccgtctcggt
gcgatcgtcaacgacctggccgagcgctacaccaaggtcgaggtcgctgcgtccctggac
gccctgaaggacgccggcttccactgggcgacccgctcgggtgtgaccgtgtcgatcgac
gacgtgaccacgcctgactccaaggccgcgatcctcgaggactacgagaagcaggccgag
aaggtccagaagaactacgagcgcggtgtgatgaccgacgacgagcgtcgtcaggagctc
atcgagctgtggacccaggctgctgccgatgtcgggaaggcgatggaggccaacttcgac
cggtcgaaccccatctacatgatggtcgactccggcgcctccggaaacatgaaccagatc
cgccaggtcgcggccatgcgtggtctggtggccaacccgaagggcgagatcatcccgcgc
ccgatcaaggccaacttccgtgagggcctctcggtcctggagtacttcatctccacccac
ggtgcccgcaagggtctggccgacaccgcgctgcgcacggccgactcgggctacctgacc
cgtcgtctggtggacgtgtcgcaggacgtcatcatccgcgaggacgactgcggcaccgag
cgcggcctgcccaagctgatcggtgagcgtctcgaggacggcaccgtcgtcaagcacgag
cacgtcgagacctcggcctacgcccgcgcggcggcggtcgagatcacccacccggagtcc
ggcgaggtgctcgccgctgctggtgaggacctcggcgacgtcaagatcggcgagctcgtg
gcggccggcgtggtcgaggtcaaggtccgctcggtcctgacctgtgacgccaagaccggc
acctgcgccaagtgctacggacggtcgctggccaccggcaagctcgtcgacatcggcgag
gcggtcggcatcatcgccgcccagtcgatcggtgagcccggcacgcagctgaccatgcgt
accttccacaccggtggtgtggcctccgcggacgacatcacgcagggtctgccccgcgtg
gtcgagctcttcgaggctcgctcgcccaagggccgcaccccgatctccgaggccgccggc
cgggtggagatcgaggagaccgacaaggcacgcgtcgtgaaggtcacccccgacgacggc
tccgaggtgctggagatcccggtctccaagcgctcgcgcctcaacgtcgaggacggccag
cacatcgaggtgggtcaccacatcacctccggtacgcccgacccgcaggacgtcctgcgc
atcctgggtgtccgcaaggcgcaggagcacctcgtggacgaggtccaggaggtctaccgg
tcccagggcgtgtccatccacgacaagcacatcgagatcatcgtccggcagatgctgcgc
cgggtgacggtcatcgagtcgggtgcgaccaacctgctcccgtccgacctggtcgaccgg
gtgcgcttcgaggaggagaaccgccgtgtggtctccgagggcgagaagcccgcctcgggt
cgtccggtcctcatgggcatcaccaaggcatcgctcgcgaccgagtcgtggctctcggcg
gcctccttccaggagaccacccgggtgctcaccgacgccgcgatcaacggccgctccgac
agcctccgtggcctgaaggagaacgtgatcatcggcaagctgatccccgcgggcaccggc
ctggagcgctaccgcaacatccgggtggagcccaccgaggaggcgcgcgccgcggcctac
tcggtgaccggctacgactcctacgactacgacttcggtccgtcgtcgcaggctgtcgcg
ctcgacgacttcgacttcgggtcctaccagaactag
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