Nocardioides seonyuensis: EXE58_12110
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Entry
EXE58_12110 CDS
T06627
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nsn
Nocardioides seonyuensis
Brite
KEGG Orthology (KO) [BR:
nsn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsn03019
]
EXE58_12110 (hrpA)
Enzymes [BR:
nsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EXE58_12110 (hrpA)
Messenger RNA biogenesis [BR:
nsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EXE58_12110 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
NACHT
nSTAND3
AAA_30
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QBX56135
UniProt:
A0A4P7IFT9
LinkDB
All DBs
Position
2488486..2492346
Genome browser
AA seq
1286 aa
AA seq
DB search
MSPVVKITYPPELPVSARRDDIAAALRDHQVVIVAGETGSGKTTQLPKICLEAGRGKGPA
AGGQLIGHTQPRRIAARAVAERISEELGTTLGEEVGYQVRFADHTGKASRVKLMTDGILL
AELQRDRDLRKYDTLIIDEAHERSLNIDFLLGYLKRLLPRRPDLKVVITSATIDVDRFAA
HFDAPIIEVSGRTYPVEVRYRPLLEVPEDDEEGEVVQRDQTEAILDAVRELSAEGPGDVL
VFLPGEREIRDTADALEGLESRPGSRLEVVPLYSRLSAAEQHRVFSSHPATVRRVVLATN
VAETSLTVPGIRYVVDTGVARISRYSVRTKVQRLPIEPISQASANQRSGRCGRVAEGIAI
RLYSEEDFESRPEFTDPEILRTNLASVILQMASLRLGDIARFPFVEPPDKRNVKAGTDLL
EELGAVDGPRLTKLGRRLARLPIDPRLGRMILEAERLGCVRDVLVIAAALSIQDPRERPQ
EQRAHADQLHARFTHESSDFLTWLNLMSHIREQQRELSSSAFRRMCKREFLNYMRIREWQ
DYESQLRRVCKEMGLTVEPRRPDDSGAHDEDGIHQALLSGLLSHVGVLEERDKGKPSSSG
KGERRPMREYLGARNARFAIFPGSVLKGRNPAFLMSAELVETSRLWARQNAAIKPEWAER
LGAHLVKRSYSEPHWSSKRAAVMARERVTLYGVPLVADRLVNYGRIDRDLARELFIRHAL
VQGEWQAAEQGRHEFLTRNAERLQEAEELEHRARRRDIVVDEHTLFDFYDARVGAEVVSG
QHFDQWWKLERRKHPHLLDFDPAMLTHDAAGEVRQADFPTQWHDSEEAGLTFPISYHFEP
GTVDDGLTIEVPVATLNRVDADDFSWLVPGLREELVTELIRSLPKTLRVGLVPAPNTARE
FLASTPPGAEPLLAALERFARATRSLVIPREAWDWSRIPAHLQPTFRVVDETGAEAGRGK
DLEALKEPLRETFEQAMAEVAADSGATATGQTSWTFGTLEESFVQRRAGHEVRGFPALVD
EFIHVNEPPGTPTVGLRVLATPEEAAAHHRLGVRRLVLVALVGGGRSTYETRFARTATTE
QKLALAGSPYSSVAELLADLEAAVVLDVVDSRPPVRDEASYDDLVTQARNALETSYDTAV
LDLTRLLAAWRAADKSLSGRAELMTLPALTDMRSQVGRLVGRGFVGDAGASRLRDIARYL
TGVVHRRERLESQVARDRQLMDQLSGVQAAWLHAVAALPEGAPLPAHLRTARWMIEEYRV
SLWAQQLGTREKVSDQRIRKVLGAAG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccgtcgtgaagatcacctacccgcccgagctgccggtcagcgcccgtcgcgat
gacatcgcggcggccctgcgcgaccaccaggtcgtcatcgtcgcgggcgagaccgggtcc
ggcaagacgacccagctgcccaagatctgcctggaggccggccgcgggaaggggccggcc
gccggtgggcagctgatcggccacacccagccgcggcgcatcgcagcccgcgcggtcgcc
gagcgcatctccgaggagctcggcacgacgctgggcgaggaggtgggctaccaggtgcgg
ttcgccgaccacaccggcaaggccagccgggtcaagctgatgaccgacggcatcctgctc
gccgagctccagcgcgaccgcgacctgcgcaagtacgacaccctcatcatcgacgaggcc
cacgagcgctcgctcaacatcgacttcctgctgggctacctcaagcggctgctgccgcgg
cggcccgacctcaaggtcgtcatcaccagcgccacgatcgacgtcgaccgcttcgcggcc
cacttcgacgcgccgatcatcgaggtctccgggcgcacctaccccgtcgaggtccgctac
cggccgctgctcgaggtgccggaggacgacgaggagggcgaggtcgtccagcgcgaccag
accgaggcgatcctcgacgccgtccgcgagctgtccgccgagggccccggcgacgtgctg
gtcttcctgcccggcgagcgcgagatccgtgacaccgccgacgcgctcgagggcctcgag
agccggccggggtcgcggctggaggtcgtcccgctctactcccgcctctctgccgccgag
cagcacagggtcttcagcagccaccccgccaccgtgcgccgcgtcgtgctcgccaccaac
gtcgccgagacctcgttgacggtgcccggcatcaggtacgtcgtcgacaccggcgtcgcg
cggatcagtcgctactcggtgcgcaccaaggtgcagcggctgccgatcgagcccatcagc
caggcctcggccaaccagcgctcgggccggtgcgggcgcgtcgccgagggcatcgcgatc
cggctctactccgaggaggacttcgagtctcgaccggagttcaccgaccccgagatcctg
cgcaccaacctcgccagcgtcatcctccagatggcctcgctacgcctcggtgacatcgcg
cggttccccttcgtcgagccgcccgacaagcgcaacgtcaaggccggcacggacctgctg
gaggagctgggggcggtggacggcccgcggttgaccaagctgggccgccgcctcgcgcga
cttcccatcgacccgcgcctggggcggatgatcctcgaggccgagcggctcggctgcgtg
cgcgacgtgctcgtcatcgccgcggcgctctcgatccaggacccgcgcgagcgtccgcag
gagcagcgcgcgcacgccgaccagctgcacgctcggttcacccacgagtcgagcgacttc
ctcacctggctgaacctgatgagccacatccgcgagcagcagcgcgagctctcctccagc
gccttccggcggatgtgcaagcgcgagttcctcaactacatgcgcatccgcgagtggcag
gactacgagtcccagctgcgccgcgtgtgcaaggagatgggtctcaccgtcgagccgcgc
cgccccgacgactcgggcgcccacgacgaggacgggatccaccaggcactgctgtcgggc
ctgctcagccacgtcggcgtgctggaggagcgtgacaagggcaagcccagctcctcgggc
aagggtgagcgccggcccatgcgcgagtatctcggcgcccgcaacgcccgcttcgcgatc
ttccccggcagcgtgctgaagggccgcaaccctgccttcctgatgagtgccgagctggtc
gagacgagccggttgtgggcgcgacagaacgccgcgatcaagccggagtgggccgagcgg
ctgggcgcccacctggtcaagcgctcctactccgagccgcactggtcgagcaagcgggcc
gcggtcatggcgcgcgagcgcgtgaccctgtacggcgtcccgctcgtcgcggaccgcctg
gtcaactacggtcgcatcgaccgcgacctggcccgcgagctgttcatccggcatgcgctg
gtgcagggggagtggcaggccgccgagcagggccgacacgagttcctgaccaggaacgcc
gagcgcctgcaggaggccgaggagctcgagcaccgtgcgcggcgccgcgacatcgtggtg
gacgagcacacgctcttcgacttctacgacgcccgcgtcggcgccgaggtggtcagcggc
cagcacttcgaccagtggtggaagctcgagcgccgcaagcacccccacctgctcgacttc
gatccggcgatgctgacccacgacgctgccggggaggtgcggcaggccgacttccccacc
cagtggcacgacagcgaggaggccggcctgaccttcccgatcagctaccacttcgagccg
ggcaccgtggacgacgggctgacgatcgaggtcccggtggccaccctcaaccgcgtcgac
gccgacgacttctcctggctcgtgccggggctgcgcgaggagctggtgaccgagctgatc
cggtcgctcccgaagaccctgcgggtgggcctggtcccggcgcccaacaccgctcgcgag
ttcctcgcgtcgacgccgccgggagccgagccgctgcttgccgccctggagcgcttcgcc
cgggcgacccgcagcctggtgatccctcgggaggcgtgggactggtcgcggatcccggcc
cacctgcagccgacgttccgcgtggtcgacgagaccggcgccgaggccggtcgcggcaag
gacctcgaggcgctcaaggagcccctgcgcgagacgttcgagcaggcgatggctgaggtg
gcggccgactccggcgccaccgcgaccgggcagacgtcgtggaccttcggcacgctggag
gagtcgttcgtgcagcgccgcgcgggccacgaggtgcggggcttcccggcccttgtcgac
gagttcattcacgtgaatgaacctccggggacccccaccgtcggcctgcgcgtgctcgcc
acgccggaggaggccgcagcccaccaccgcctgggcgtgcgacggctggtcctggttgcc
ctggtgggcggcggccggagcacctacgagacccgcttcgcgaggacggccacgaccgag
cagaagctcgccctggccggctcgccgtactcctcggtcgccgagctgctcgccgacctc
gaggccgcggtggtgctcgacgtcgtcgactcgcggccgccggtccgtgacgaggcgtcg
tacgacgacctggtgacgcaggcgcgcaacgcgctggagacgtcgtacgacaccgccgtg
ctcgacctgacccgcctcctcgcggcctggcgcgctgccgacaagtcgctgtccgggcgg
gccgagctgatgaccctccccgcgctgaccgacatgcgctcacaggtcggccgcctcgtc
ggccgcggcttcgtcggtgacgcaggcgcgagccggctgcgcgacatcgcccgctacctc
accggggtcgtgcaccgtcgcgagcggctcgagtcgcaggttgcccgcgaccgccagctc
atggaccagctctccggggtccaggcggcctggctccacgccgtcgccgcccttcctgag
ggtgcgccgctcccggcacacctgcgcaccgcgcgctggatgatcgaggagtaccgcgtg
tccctgtgggcccagcagctcggcacccgcgagaaggtcagcgaccagcgcatccgcaag
gtgctgggcgcggctggttga
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