Niabella soli: NIASO_00930
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Entry
NIASO_00930 CDS
T03682
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nso
Niabella soli
Pathway
nso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIASO_00930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nso03019
]
NIASO_00930
03009 Ribosome biogenesis [BR:
nso03009
]
NIASO_00930
Enzymes [BR:
nso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIASO_00930
Messenger RNA biogenesis [BR:
nso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIASO_00930
Ribosome biogenesis [BR:
nso03009
]
Prokaryotic type
rRNA helicases
NIASO_00930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SNF2-rel_dom
UTP25_NTPase-like
AAA_22
HPS6
YwpF
Motif
Other DBs
NCBI-ProteinID:
AHF14145
UniProt:
W0ETK7
LinkDB
All DBs
Position
220616..222265
Genome browser
AA seq
549 aa
AA seq
DB search
MVTFESLGIEEGLLQSLQKIGFKTPTPIQEQAIPVLLQGTKDFIGLAQTGTGKTAAFGLP
LLQLINKAFVSPQALIICPTRELCLQIANDLQSFKPENGNVHVTAVYGGTAISQQIREIR
RGTHIVVATPGRLIDLIERKAINLNDIHYVVLDEADEMLNMGFKDDIEFILKETPNRQST
WLFSATMPKEIRQVSKRYMENPFEITVGKANSVNVNIAHQYYQTQHINRYETLKRIIDFN
PGLYGIIFTRTKADAQHITEQLIREGYDIEALHGDLTQAQRDKVMARFREKSLELLIATD
VAARGIDVQGITHVINYELPDDTEVYTHRSGRTGRAGLSGISISIVTPKELYRLRQIEKL
VNTKFNKIDIPSGKDVCRKQFFHFIDKMLNADISHGEYEAYVPVLKEKFEAVTKEEVLQR
VAALEFDRFLRYYENSADLNLRNDKGDRKGDRDASRDNRNRSRGNGQYQRLFVNLGTKDG
FYKASFLQFILDMSRLNKEQLGRIDMKEMNSWVEVEADAARIMIKALDGKNYRGRRIRMN
DAEAGGRRR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtggttacatttgagtcacttgggattgaagagggattacttcaatcattacagaagata
ggttttaaaacacctactcccattcaggaacaggcaattcccgttttactgcaaggaaca
aaggattttataggactggcacagacaggtacaggaaaaacggccgccttcggtttgcct
ttactgcaattaattaataaggcatttgtatcgccgcaggcactgatcatttgccctacg
cgcgaactttgtttacaaattgcaaatgacctgcaatcctttaaaccggagaatggaaac
gttcacgttacggcggtttatggcggaacggccatcagccagcaaatacgcgaaataaga
aggggaacacatattgttgtggctaccccgggccgtttaattgacctgatcgagcgcaaa
gcgatcaaccttaatgatatccactatgtggtactggatgaggcggatgaaatgctgaat
atgggttttaaggatgatatcgaatttattttaaaagaaacgcccaaccgccaaagcacc
tggctgttcagtgctaccatgcccaaagagatacggcaggtaagtaaacggtatatggaa
aacccgtttgaaattaccgtgggtaaggcaaattctgttaacgttaatattgcccaccaa
tactaccaaacgcagcatataaaccgttatgaaaccctgaaaaggatcatcgattttaac
cccggcttatatggtattatttttacccgcaccaaggcggatgcacagcatattaccgaa
caactgattcgtgaaggatacgatatagaagcgctgcatggtgatctgacgcaggcgcag
cgcgataaagtgatggcacgttttcgtgaaaaatcactggagctgctgatcgctacagac
gtggctgcccggggtatcgacgtacagggcatcacccatgtgatcaactatgaattgccc
gatgatacagaagtgtacacccaccggagcggaagaaccgggcgggcgggattgagcggc
atttccatttcaattgtaacgcccaaggaattatatcgcctgcggcagattgaaaagctg
gtaaacacaaagtttaataagatcgacattccttccggaaaggatgtttgccgcaagcag
tttttccattttatcgataaaatgctgaatgccgatatcagtcacggcgaatatgaagcc
tatgtaccggtactaaaagaaaaatttgaggccgtaacaaaagaggaagtattgcagcgg
gtggccgcgcttgaatttgaccggttcctgaggtattatgagaactctgcagatctgaac
ttaagaaatgataagggtgaccggaaaggagacagggatgcatccagggataaccggaac
cgctcccgtggcaacggacaataccagcggctgtttgtaaacctgggtaccaaggacggt
ttttacaaagccagcttcctgcaatttatcctggatatgagccggttaaataaagaacaa
ctgggacgtattgatatgaaggaaatgaacagttgggtggaagtggaggctgatgcagcg
cggattatgatcaaggcgctggacggcaaaaattaccgcggcagaagaatcagaatgaat
gatgctgaagcgggtggaaggagaagataa
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