Niabella soli: NIASO_06540
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Entry
NIASO_06540 CDS
T03682
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nso
Niabella soli
Pathway
nso02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nso00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NIASO_06540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nso03021
]
NIASO_06540
Transcription machinery [BR:
nso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIASO_06540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Flu_PB2_3rd
Motif
Other DBs
NCBI-ProteinID:
AHF14910
UniProt:
W0EVS2
LinkDB
All DBs
Position
complement(1400447..1401304)
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AA seq
285 aa
AA seq
DB search
MRQLKIATQITNRDSQAVEKYLQEISKISMITPEEETTLAQKIKMGDQRALDKLVQANLR
FVVSVAKQYQHQGLSLSDLINEGNLGLIKAAQRFDETKGFKFISYAVWWIRQSILQALAE
QGRLVRLPQNKIGTYNKANKAYMAFEQEHEREPSTEELSELLEMSETEINNIFQSNTRHT
SLDAPVHEAEDVAMGDLLEGGSDTDDDVMKDSLRNEIRRVLKSLSPREAEIVNAYFGLDG
ENGVTIEQIGQKYDLTKERIRQIKERAIKRLQKARYSSALKSYLG
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcagctaaaaattgctacacaaatcaccaaccgtgattcccaggcggtggaaaaa
tacctccaggagatttcaaagatctcgatgatcactcctgaagaagaaaccactctggcc
caaaaaattaaaatgggggatcagcgtgcgctggataaactggtgcaggcgaacctgcgt
tttgtggtatcggtagccaagcaataccagcaccaggggctttcgctgagtgacctgatt
aatgaagggaacctggggttgataaaagcggctcagcgttttgatgaaaccaagggcttt
aaattcatttcctatgcggtttggtggatccgccagtctattttgcaggctttggccgag
cagggacgtttggtgcgtttgccacagaataagatcggtacctacaataaagccaacaag
gcctatatggcctttgagcaggagcacgaaagagagccttctacagaggagttatctgaa
ctgctggaaatgagcgaaacagagatcaacaatattttccagagcaatacccgccatact
tcactggatgcacccgtgcacgaagcggaagatgtggccatgggtgatctgctggaaggc
ggttctgatacggatgatgatgtgatgaaagattcgctgcgcaatgagatccgtcgggtg
ctgaaatcgctttccccaagagaggctgaaatagtaaatgcatattttggcctggatggc
gaaaatggcgttactattgagcagatcggtcagaaatacgatttgaccaaagaacgtata
cgccagatcaaagaacgggctattaaacgcctgcaaaaggcgcgctatagcagtgcgctg
aagtcttacctgggatag
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