Niabella soli: NIASO_13245
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Entry
NIASO_13245 CDS
T03682
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nso
Niabella soli
Pathway
nso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIASO_13245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nso03019
]
NIASO_13245
03400 DNA repair and recombination proteins [BR:
nso03400
]
NIASO_13245
Enzymes [BR:
nso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIASO_13245
Messenger RNA biogenesis [BR:
nso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIASO_13245
DNA repair and recombination proteins [BR:
nso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIASO_13245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHF15864
UniProt:
W0F2Y3
LinkDB
All DBs
Position
complement(2865655..2867571)
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AA seq
638 aa
AA seq
DB search
MEQALQETLKNYFGFDQFRPLQLDIIRAAMEGKDVLALMPTGGGKSLCYQVPGLFKEGLC
LVISPLIALMNDQVQNLRKKNITAFAIHTGMARKEVVNVLKTAAHSNCKFLYVSPERLET
NLFKEYLPALQVNFIAVDEAHCISQWGYDFRPPYLRIARLREELPGVPVIALTASATLKV
QEDICLKLSPEGENKFLVFRQSFERPNLSFSVFKVASRIHKIIEVLKNVPGSAIIYCKTR
KHTKEIKDLLLLEGIAADYYNAGLPAEERTQKQRDWVQNKTRVIVCTNAFGMGIDKPDVR
TVIHADVPDCLENYYQEAGRAGRDGQKSYAVLLYNEADMDALQQLPEQRFPSMETIRNVY
GGVVSYLQLPEGEAPGEFYDFDLKDFIKKFGLDITSAIYSLKALEQDGWLTFNEQVFIPA
TVRFTAYKESLYEYEATHADLEPLIKTLLRTYEGIYDYPIGISESYIAYLMKTDASMVKE
QLFRIHADGIIDYQPRKEDPQLMLTRTRIKIAELQINTKNYTARKRLFAERVIQMSDYTV
AEKECRSKIIGNYFGDADIKDCGVCDNCLKRRNNQLTREVFESIQTTIRETLTEPCTIPQ
LMAQLQGTDKDHIWTVINFLTREEKIQMLEDGKISWRK
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggcgctgcaggaaacgttaaaaaattattttggttttgaccaattccgtcca
ttgcagcttgatattatccgcgccgcaatggaggggaaagatgtattggctttgatgcct
accggtggtggcaaatcgctctgttatcaggttcccgggttatttaaagagggcctgtgc
ctcgttatttccccgctgatcgccctgatgaacgaccaggttcagaacctgcgcaaaaag
aatatcactgcctttgccatacataccggcatggcccgcaaggaagtggtcaatgtactc
aaaacagccgcgcacagcaactgtaagtttttgtatgtttcgcccgagcggctggaaaca
aatctttttaaagaataccttcctgcattgcaggtgaatttcattgcggtagatgaagca
cactgcatttcccaatggggctatgattttcgtccgccttatctgcgtattgcccgcctg
cgcgaagagctgcccggtgtaccggtgattgcgcttaccgcgtcggctacgctaaaagtg
caggaagacatttgtttgaaattatcccccgagggagaaaataaatttcttgttttcagg
caatcatttgagcggcctaatctttccttcagcgtttttaaagtcgccagtcgcattcat
aagatcattgaggtgttgaaaaatgttccgggttcagcgattatttattgtaaaacccgc
aagcataccaaggagatcaaagacctgctgttgctggaagggattgcggccgattactac
aatgcgggcctgccggctgaagaacgaacccaaaaacaacgggactgggttcagaacaag
acgcgtgtgatcgtttgtaccaatgccttcggaatgggtatcgataagccggatgtgcgt
acggtgatccatgccgatgtgccggattgcctggaaaattattaccaggaagcgggccgg
gccgggcgggatgggcaaaaatcctacgccgtgttgctatacaatgaggccgatatggat
gctttacagcaactgccggagcagcgtttcccgtcaatggaaaccattcgtaatgtgtat
ggtggtgtggttagttacctgcaattgcccgaaggagaggccccgggcgagttttatgac
tttgacctgaaggattttataaaaaaattcggactggacataacttccgctatttacagt
ttaaaagccctggagcaggatggctggctgacctttaatgaacaggtttttataccggct
accgtgcgctttacggcttacaaggaaagcctctacgaatatgaagctacgcatgcagac
ctggagccgctgattaaaacgcttttacgaacctatgaagggatctacgattacccgatc
ggtatttctgaaagttatattgcctacctcatgaaaacagatgcttcaatggtgaaggag
caattgttccggatccatgcggatgggattattgattaccagccccgcaaggaagatccg
cagctcatgctgacccgcacgcgcataaaaatagcggagttacagatcaacacaaagaat
tataccgcccggaaacggctgtttgcggaacgcgtaatccaaatgagcgattatacagtt
gccgaaaaagaatgtcgcagcaaaataatcggtaattattttggcgatgccgacatcaaa
gattgtggtgtctgcgataattgtttaaaacgaagaaataaccaattgacccgtgaggtt
tttgaatccatccaaactacgataagggaaacacttacagaaccttgcacgataccgcag
cttatggcacaattacagggtaccgataaagaccacatttggacggtgatcaactttctt
acacgtgaagaaaaaatacaaatgctggaagatgggaagatcagttggaggaaataa
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