Niabella soli: NIASO_18875
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Entry
NIASO_18875 CDS
T03682
Name
(GenBank) recombination protein RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nso
Niabella soli
Pathway
nso03410
Base excision repair
nso03430
Mismatch repair
nso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIASO_18875
03430 Mismatch repair
NIASO_18875
03440 Homologous recombination
NIASO_18875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nso03400
]
NIASO_18875
DNA repair and recombination proteins [BR:
nso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIASO_18875
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIASO_18875
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIASO_18875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AHF16678
UniProt:
W0F4F7
LinkDB
All DBs
Position
complement(4160135..4161832)
Genome browser
AA seq
565 aa
AA seq
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MEKRWHIAPADEAAVQTLRDALKIHPVLCRILTQRGITTFTNAKEFFRPQLEALHSPWLM
KDMDHAVNRLLKAFSAGEKILVFGDYDVDGTTAVAVMYRFLSTQTQQLDFYIPHRYKEGY
GISKAGIDFAKENGFTLVVALDCGIKSIDLIDYANTLEIDFIICDHHLPDEKIPAAVAVL
NPKQKDCPYPYKELCGCGVGFKLITALVEKLGLPQSFSYQYLDLVATAIAADIVPITGEN
RILAFHGLEVANKEPNPGIKALAFLSGAKLPLHIHNLVFMIAPRVNAAGRMDDARKAVQL
FVAGTYEEALAYAELLHSDNSDRKEADAAITEEALEMIAQNASWTSRKSTVVYQPHWHKG
VVGIVASRLIERHYRPTVVLTESGAYAAGSARSVPGFNLYEAIHACREYLIAYGGHFAAA
GLTLSKDNIEAFREKFEAIVSITISDDQLIPELLIDAAIKFKDISPAFYNIIKQMEPFGP
ENMTPVFIARNVKDAGSKVVKEKHLRFVVQQDGVPLTGIGFNLADKLPIIESGHPFDLVF
KIDENEWQGQKSLQLRVEDIRLAEV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaaagatggcacattgcacctgccgatgaagcggccgtacaaacacttcgagat
gcattaaaaatacaccccgttctttgccgtatattaacccaacggggaattaccaccttt
accaacgctaaagaatttttcagaccacagttggaggccctgcacagcccatggctgatg
aaggatatggaccacgcggtaaaccgcctcttaaaggcttttagcgccggtgaaaaaata
ctggtttttggcgattacgatgtagatgggaccacagccgtggccgtaatgtaccggttt
ttgagcacccaaacacagcaactggatttttatatacctcaccgttataaagaggggtat
ggtatcagcaaggcaggcatcgattttgccaaagaaaatggatttacgctggtggtagcc
ctggattgcggtattaaatcaatcgatctgatcgattatgccaacacgctggaaattgat
ttcatcatctgcgatcaccatttacctgatgaaaaaattccggcggccgtagcggtacta
aaccctaagcaaaaggactgcccctacccttacaaagaactttgcggctgtggcgttgga
tttaaactgattacagcccttgttgaaaaactgggattaccccagagtttttcctatcaa
tacctcgacctggtagctaccgccattgccgcggatattgttcccattacgggagaaaac
cgcattcttgcctttcacgggctggaagtggccaataaagaacccaatcccggaataaag
gcgcttgcctttttaagcggagccaaactcccactccacatacataatcttgtgtttatg
atcgcaccgcgggtgaatgccgccgggcgtatggacgacgcaagaaaagccgtgcaacta
tttgttgccggaacctatgaagaggcattagcctatgccgaactcctgcacagcgacaac
agcgaccgcaaggaggccgacgccgcaattacggaagaagcactcgaaatgattgcccaa
aatgcatcctggacctcaagaaaatcgaccgttgtgtaccagccgcactggcataaaggc
gtagtgggcattgttgcctcacggctgatcgaacggcattaccggccaacagttgtactg
acagaaagcggcgcttacgccgccggtagcgcccgcagtgttccgggctttaatctctat
gaagccattcatgcctgcagagagtatttaatcgcctatgggggccattttgccgcagcg
ggacttacacttagcaaagacaacatcgaagcctttcgtgaaaaatttgaagcgatcgtt
tctattaccatttcggacgaccaactgatccccgaactgctgattgacgccgcaataaag
ttcaaagacatcagccctgccttttacaatattatcaagcaaatggagccctttggcccc
gaaaacatgactcccgtttttatagcccgcaacgttaaagatgccggcagcaaagtggta
aaggaaaaacacctgcgttttgtggtacaacaggatggggtgccccttacaggaattggc
tttaacctggcagacaaactaccgattatcgaaagcggacatccttttgaccttgtattt
aaaattgacgaaaacgaatggcaggggcaaaaaagcctgcaattgcgggtggaggatatc
aggcttgctgaggtgtaa
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