Nodularia spumigena: BMF81_00717
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Entry
BMF81_00717 CDS
T05403
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
nsp
Nodularia spumigena
Pathway
nsp03030
DNA replication
nsp03430
Mismatch repair
nsp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMF81_00717 (holB)
03430 Mismatch repair
BMF81_00717 (holB)
03440 Homologous recombination
BMF81_00717 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsp03032
]
BMF81_00717 (holB)
03400 DNA repair and recombination proteins [BR:
nsp03400
]
BMF81_00717 (holB)
Enzymes [BR:
nsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BMF81_00717 (holB)
DNA replication proteins [BR:
nsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BMF81_00717 (holB)
DNA repair and recombination proteins [BR:
nsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BMF81_00717 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AAA_22
AAA_16
UspB
Motif
Other DBs
NCBI-ProteinID:
AVZ29806
UniProt:
A0A2S0PZE7
LinkDB
All DBs
Position
complement(868279..869232)
Genome browser
AA seq
317 aa
AA seq
DB search
MTIDPFSPLLGQSQAIELLTQAVKQNRVAPAYLFVGIDGVGKTLAARCFVELLFSAQTRN
IASLQSRLRQGNHPDLWWVQPTYQHEGKRLTAAEAAEKKLKRKAPPVIRLEQIREITEFL
GRPPLEAPRNVVVLESAQTMAESAANALLKTLEEPGQATVILIAPSPESVLPTLVSRCQR
IPFYRLDTQSLTQVLTQAGHEEILQHQTILSIAAGSPGSAIASYEQLQIIPETLLQDVTK
VPSSYRQALELAKTIAQELDTEAQLWLVDYLQQSYWQQWHKAEIIHKLEKARKSLLCYAQ
PRLVWECTFIALLMHLS
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgatccattttctccacttttagggcagtcacaagccatagaattactcact
caagctgtcaaacaaaaccgagtcgccccggcttatttatttgtggggatagatggtgtg
ggaaaaactctagccgcgcggtgttttgtcgaattgttattttccgcccaaacacggaat
atcgcttctttacaaagtcgtttgcgtcaaggtaatcatcctgatttgtggtgggtacaa
ccaacatatcaacacgagggaaaacgcctcacagcagcagaagcagcagagaaaaaactc
aagcggaaagcaccgcctgtaattagactagagcagatacgggaaattactgagtttctc
ggccgtccccccttggaagcaccgcgaaatgtggtagtgctggagtcagcccaaacaatg
gcagaatcagccgctaatgctttgctgaaaactttagaagaacccggacaggccaccgta
attttgattgcaccatctcctgagtcggttttgcccacattagtgtcacgctgtcaacgt
attcctttttatcgcttagatacacagtctttaactcaggtactcacccaagccggacat
gaggaaattttgcagcatcagacaatattgagcatagcagctggtagcccaggcagtgcg
atcgcatcctatgagcaattacaaataattcctgaaaccttactccaagatgtcaccaaa
gtgccttcatcctaccgccaagccttagagttagccaagacaattgctcaagagttagat
acagaagcacaactatggttagtcgattatcttcaacaatcctactggcaacagtggcat
aaagcagaaattatacacaaattagaaaaagctcggaaatccttactttgttacgcccaa
ccacgtctagtgtgggaatgcacattcatcgccttgttgatgcatctgagttga
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