Nodularia sphaerocarpa: BDGGKGIB_00686
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Entry
BDGGKGIB_00686 CDS
T08134
Symbol
crhR
Name
(GenBank) RNA helicase CrhR
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDGGKGIB_00686 (crhR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsph03019
]
BDGGKGIB_00686 (crhR)
03009 Ribosome biogenesis [BR:
nsph03009
]
BDGGKGIB_00686 (crhR)
Enzymes [BR:
nsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BDGGKGIB_00686 (crhR)
Messenger RNA biogenesis [BR:
nsph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BDGGKGIB_00686 (crhR)
Ribosome biogenesis [BR:
nsph03009
]
Prokaryotic type
rRNA helicases
BDGGKGIB_00686 (crhR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
ADAMTSL1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ULP71064
LinkDB
All DBs
Position
complement(780407..781909)
Genome browser
AA seq
500 aa
AA seq
DB search
MTLSFQELGISQNRVEQLENIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILEQMDVNHKAVQALVLTPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLKR
GVHMVVGTPGRIIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPKERQTA
LFSATMPPSIRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDLLSHVINFDLPDSAETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFERH
NRQNWQLLTIPTRAQIEARHILKLQEQVKEALTGERLASFLPIVSELIEEYDAHAIAAAA
LQIAYDQTRPAWLQSGVDPQDDEPSSKPKLAKRRGGEASNDRNRSWNKPDNNGGSPKPKL
RTNTSNRRDASVSSSNAGRE
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgactctttcttttcaagaattaggtatttcacaaaaccgtgttgagcaactagaaaac
atcggctttaccacacctactaatattcaaactcaagccattccgcaactgctagcaggt
cgggatgtcgtgggtcaatcccaaaccggaacaggcaaaaccgcagcattttccctgccc
atcttagagcagatggatgttaatcacaaagctgtacaagccctggtactaaccccaact
cgtgagttagcaattcaagttcacgatgccattaaccaatttgtgggcgacgaaggattg
cggattctggccatttatggtggtcaatccattgaacgccaaatgatgcaactcaaacgc
ggtgttcacatggttgtgggtacaccagggcggatcatcgacttactagatcggggctgt
ttgaagcttgatcaagtcaagtggtttgttttggatgaagctgatgaaatgttgagcatg
ggctttattgatgacgtgatcaaaatcctgtctcaagcccccaaagagcgccaaacagcg
ttattctcggcgacaatgccaccatcgattcgcatgattgtcaacaaattcttgcgaaat
ccagctacagtcaccgttgagcagccaaaggcttcacccaacaaaatcaatcaagtcgct
tatctgattccccgtcattggacaaaagccaaagcattgcagccgattttggaaatggaa
gatccagaaacagctttaatctttgtgcgtaccagacggacagccgcagaacttaccaat
ctcctacaaggagccggtcacagtgtggacgaataccacggcgacttgtctcaacaggcg
cgggagcgattattaacccggttccgtaatcgtcaagtgcgctgggtggtagcaactgat
attgctgcacgggggctagatgtggatctgctgtctcatgtaattaacttcgacttgcca
gatagcgccgaaacctatgttcaccgcattgggcgtactggtcgggctggtaaagaaggt
acagcaatttccttggtacaaccttttgaacgccgcaaacagcaggcatttgagcgccat
aaccgccaaaattggcaattgctgacgattcccacacgggcgcagattgaagcgcgacat
atcctgaaattgcaagaacaagtgaaagaagccttgactggcgaacgtttagcttcattc
ttgcccatagttagcgaattgattgaagaatatgatgctcatgcgatcgccgcagctgca
ttacaaatcgcctatgatcaaactcgtcccgcttggttacaatcaggcgtagatcctcaa
gatgatgagccttcctccaagccgaagttagccaagcgtcgtggtggtgaagcttcaaac
gacagaaatcgttcctggaacaaaccagacaacaatggaggtagtcccaagcccaagcta
aggacaaataccagtaatcgccgagacgcttctgtgtcctcttcaaatgctggtagagaa
taa
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