Nodularia sphaerocarpa: BDGGKGIB_01231
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Entry
BDGGKGIB_01231 CDS
T08134
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDGGKGIB_01231 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsph03019
]
BDGGKGIB_01231 (rhlE)
Enzymes [BR:
nsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BDGGKGIB_01231 (rhlE)
Messenger RNA biogenesis [BR:
nsph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BDGGKGIB_01231 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
Sacchrp_dh_NADP
P-loop_SecA
CMS1
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ULP71600
LinkDB
All DBs
Position
1507330..1508661
Genome browser
AA seq
443 aa
AA seq
DB search
MSFSNLGLSNEIIRAVTERGYTEPTPIQIQSIPAVLSGGDLLAGAQTGTGKTASFTLPLL
HRLSEESVISRSNGAIRALILTPTRELAAQVESSVRDYGKYLNLNTMAMFGGVSINPQKR
LLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKK
RQNLLFFATFSDKIKALATGLLHHPKMIEVARRNVTADTVAQKVYKVDRDRKRQLLAHLI
KKDNWYQVLVFTRTKHGADRLVKQLTEERIQALAIHGNKSQSARTHALAKFKNGSLQVLV
ATDIAARGLDITELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLLADI
EKLIKQRLPFEVVAGFANLTTQPESISDGRKHRSPGSKGAAGSTAKPLPQKSAKKSPPRT
VTGGKKSDARPSASRRWTKRDDR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctaatctcggcttgtccaatgaaattatccgtgctgtcaccgagcggggg
tacaccgaaccgacgccaatccagatccagtctatccctgctgtcttgtcaggtggcgat
ctcctagctggcgctcaaactggtacgggaaagactgcaagcttcactctgccgctcctg
catcggttatccgaagaaagcgttatcagcaggtctaatggagcgatccgggcgctgatt
ctcaccccgacccgtgaactggccgcacaggtggaatcaagcgtacgtgattacggcaag
tacctgaatttgaacacaatggcgatgttcggtggggtgagcattaatccgcagaaacgc
cttttgaagggtcgcgtggatattctggtcgctaccccagggcgattgctagaccatgtg
cagcaggggacggtaaacctgtcacagattgagattttggtgctggatgaagcagaccgg
atgttggacatgggttttattcgtgatatccgtcgtattctttccctactacccaaaaag
cggcaaaacttgctgttcttcgccactttctcggataaaatcaaggcactggccacaggg
ctgcttcatcacccgaagatgatcgaggtggcacgccgcaacgttaccgccgatactgtg
gcacagaaagtttacaaagtagaccgagacaggaagcgccaattacttgctcacctgatt
aaaaaagataattggtatcaagtgctagttttcacccgcactaagcatggtgctgaccgt
ctggtgaagcagttgactgaggagcggatacaagcactggccatccacggtaataaaagc
cagtcggcgcgtacccacgctctggcaaagttcaaaaacggcagtttacaagtattggtg
gcaaccgacattgccgcgcgaggtctcgatatcaccgaactgccccatgtagtcaatttc
gatctgcccaatgtcccggaagattatgttcatcgcatcggtcgcactggtcgcgctggt
gcgtcaggtgaagctgtatcgctggtgagcgccgatgaatatcatctgctggcagatatc
gaaaaactgattaaacagcgcttaccttttgaagtggttgctggctttgcaaatttgacg
actcagcccgaatcaatttccgatggacgcaagcacagatccccaggtagcaaaggtgcg
gctggctctacggctaaaccgttaccacaaaaatcagcgaaaaaatcgccaccgcgaacg
gtgacaggtggtaaaaagtccgatgctcgtccctctgcatcacgtcgttggactaaacgc
gatgatcgctga
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