Nodularia sphaerocarpa: BDGGKGIB_01708
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Entry
BDGGKGIB_01708 CDS
T08134
Symbol
rnr_2
Name
(GenBank) Ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
nsph
Nodularia sphaerocarpa
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nsph03016
]
BDGGKGIB_01708 (rnr_2)
Enzymes [BR:
nsph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BDGGKGIB_01708 (rnr_2)
Transfer RNA biogenesis [BR:
nsph03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BDGGKGIB_01708 (rnr_2)
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
YnaL
Motif
Other DBs
NCBI-ProteinID:
ULP72071
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Position
2112457..2114517
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AA seq
686 aa
AA seq
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MDKGTLVEFRVQGDRRLGVVDRPDGKTRWFVLDERGQSHSLAPRQISYTVNGQTYKPSEI
SSFQGQVQPYIDPSSLEVAWELLVEDGETVTPAQMANLLFSESEAAACYAAHCLLSEDKL
YFKQKGEAYEPRTAAQVAELKHQTEVKALKAKGQEEFLSRVEQALQGEAVEWQRHDRQRL
EALEKYAALLADVVRMGVNYDTLARAYPPPAPVLETMNMLGRSATPPGAFQLLIDLAWWD
AHENLFLRRSSIPVQFPSKVLEVAQQRLDFPPTDLDTNRLDLSHLKVYTIDDESTTEIDD
GLSWELLPDGRERLWVHIADPTRWLVPDDELDLEARKRGSTVYLPTGMVPMFPELLATGP
MSLVQGRISCALSFGVVLDETGGVEDYSIHPSFIKPTYRLTYEDVDEMLELGVEAEPEIE
AIANWAKQRKSWRYNQGAISINMPEATIKVKNDQIDIDILDDSSSRQLVAEMMIMAGEVA
ARYGQAHNIPLPFRGQPQPELPPDEELLLLPAGFVRSCAMRRCMPKSEMSITPLRHAGLG
LNTYTQATSPIRRYSDLLTHFQLKAHLRGESLPFTADQLREVMMTVTSTTQEVTMVERQT
NRYWALEYLRRHPDQVWDVTVLMWLREDSNLALILLEDLGLQLPMFFKRSVGLGEQVLVK
VSHADPQKDMIQFQEIIYQESHQATN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggataagggtacgctagttgaatttagggttcaaggcgatcgccgtctgggagtagta
gaccgcccggacggcaaaacccgttggtttgtgttagatgaacgtggtcaatctcacagc
ctcgcgcctagacaaattagttatacagttaacggacaaacctataaaccctcggaaatt
agcagttttcaagggcaggttcaaccttatatagatccctctagtctggaagtagcttgg
gaattactggtggaggatggagaaacagtcacaccagcccaaatggcgaatctgctgttt
tccgaatcagaagcggcagcttgttatgctgcccattgcttgttatcagaagacaaactg
tatttcaagcaaaaaggagaagcctacgaaccacgaacggcggcgcaggtagcagaactc
aaacaccagacagaagtcaaggcactgaaagccaagggacaggaagaatttttatctcgc
gtagagcaagccctccagggtgaagcggtggaatggcaacgccacgaccgccagcgatta
gaagcactggaaaaatacgcagcattgctcgctgatgtggtgcgaatgggagtaaattat
gatactcttgcccgtgcctatccgccgccagccccagtgttagaaacaatgaatatgctg
ggtcgttcggcaactcctccaggagcttttcagttattaatagacttagcttggtgggat
gcccatgaaaacttgtttctgcgtcgttcgtcaattccggttcagtttcctagcaaggta
ttagaagtggcgcaacagcgtttggatttccccccaactgacttagatacaaatcgccta
gatttgtctcatttaaaggtctatacaattgatgatgaaagcactactgagatagacgat
ggtttaagttgggaattacttccagatgggcgagaacggttatgggtgcatattgccgat
cctacccggtggttagtgccagacgatgaattagacctggaagccagaaaacggggaagt
acagtatatttaccgacgggcatggttcccatgttcccggaattattggcaactggtccc
atgagtttggtacagggaaggatttcttgcgccttgagttttggggtggttttagatgaa
accgggggtgtagaagattacagcattcatcctagttttattaagccgacttatcgcctc
acctacgaagatgtggatgagatgctggagttaggtgtagaagcagaaccagaaattgag
gcgatcgctaactgggcaaaacagcgcaaatcttggcggtataatcaaggagccatcagc
atcaatatgccagaggcgacgatcaaagtcaaaaatgaccagatcgatattgatatttta
gatgattcttcatcacggcaattggtagcggaaatgatgattatggcgggtgaagtagcc
gcccgttacggtcaagctcacaatatacctctgccctttcgtggtcaaccacaaccagaa
ttacctccagacgaagaactgctgttactcccagccggatttgttcgctcctgcgccatg
cgtcgttgtatgcccaagagtgaaatgagcatcacgcctttacgccatgctggtttaggt
ttaaatacgtacactcaagcaacttcccccattcgccgttacagtgacttactgactcac
tttcagttaaaagcccacttacggggtgagagtttgccctttacagccgaccaactccga
gaagtgatgatgacagtaacctctaccacccaagaagttacaatggtagaacggcagacg
aatagatattgggctttagaatatttgcgccgtcatcccgaccaagtttgggacgtgaca
gtgttaatgtggctacgggaagacagcaatttggcactaattttgttagaagatttaggc
ttacaattgccgatgttctttaaacgttctgtaggattaggagaacaggtattagtcaaa
gttagtcacgctgacccgcaaaaagatatgattcagtttcaggaaatcatttatcaagaa
agccatcaagcaacgaattag
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