Nodularia sphaerocarpa: BDGGKGIB_02439
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Entry
BDGGKGIB_02439 CDS
T08134
Symbol
pcrA_2
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03420
Nucleotide excision repair
nsph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDGGKGIB_02439 (pcrA_2)
03430 Mismatch repair
BDGGKGIB_02439 (pcrA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsph03400
]
BDGGKGIB_02439 (pcrA_2)
Enzymes [BR:
nsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDGGKGIB_02439 (pcrA_2)
DNA repair and recombination proteins [BR:
nsph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDGGKGIB_02439 (pcrA_2)
MMR (mismatch excision repair)
Other MMR factors
BDGGKGIB_02439 (pcrA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ULP72788
LinkDB
All DBs
Position
complement(2934547..2936901)
Genome browser
AA seq
784 aa
AA seq
DB search
MSDAHFRATVPQESLPSQLQEKILDIRNSLRPGQQQMADWQFGPLAVSAVPGAGKSTGMA
ASVAIAIARQYQVSAQLRPSSRRHIVVVTFTRSAAANIKLKIRGYLKQLSLPPTGFAVYT
LHGLALNIASRHPHLSGLELENVTLITPNQSHRFIRTAVEQWINNNREPYSLLLEGHQFD
GEETERLRRQSVLRTEVLPDLASTVIHEAKSSGILPEKLREWSQKTTDKYGILRVAAGLY
EQYQNLMRSRDFIDYDDMILAALRVLDNESARRIEQNQVFAVFEDEAQDSSPLQTKLLEI
LATNQEYNSSLPTPYSPLNLVRVGDPNQAINSTFTPADPIYFREFCKECDRLGKLATMDQ
AGRSTRIIIAAANFALEWVNSFYQLKNQPSPPPPFRDQNIRPVDTADPQTNPNPAPVGRG
LELYTPRDIYHTVELLSQRVIELFTQNPKEMSGAILVRENRQGRWLGEMLTPVCKEHKIT
LYDVGESDRRSHIPQEMLGLLQFCDRPHSPDFLKAALEVLVQRQLIPTQDLNALASLPEE
FLYPGPLAELQTDTVQKAAHLCRSLLRARLELPLYHLIAFLALTLKYDQAELATADKLSE
RVNQQIGENNSMEAMLCALSEIVTSERFEAVETDDLDARYTRGGQLTIITMHKAKGLDWD
YVFMPFLHENLIPGKFWVPPKSQFLGDFTLSEVARAQIRTAIHGESNIPNVSHGWEQAKH
LKTSEEYRLLYVAMTRAKRLLWMSASQQAPFTWNKPENLQEQAPCPVFPALKRQFPECVV
TLAT
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgctcattttagggctactgtgcctcaagaatctctcccgtcacaattacaa
gagaaaattttggacatccgcaatagtctccgcccaggacaacaacagatggctgattgg
caattcggtccattggctgtttccgccgttcctggggctggtaaatccactgggatggcc
gcatctgtagcgatcgcgatcgcccgtcagtaccaagtttctgcacaattacgcccttct
tcccgccgtcacattgtagttgttacctttactcgttcagcagctgccaatattaaatta
aaaattcgcggctacttaaaacaattatctttacctccaacaggctttgctgtctatact
ctgcatggtctagctttgaatattgccagccgtcaccctcatttatcagggttagaatta
gaaaatgtcacattaatcacacccaaccaaagccaccgttttattcgcacagccgtagaa
caatggattaataacaatcgggaaccttattctctgttgctagaaggacatcaatttgac
ggtgaagagacagaaagattacgccgtcagtcagtgttacgaaccgaagttttaccagat
ttggcgagtacagtcattcatgaagctaaaagttcgggaatattgccagaaaaactgcgg
gaatggagtcaaaaaactacagataaatatggaattttacgggtagctgcgggattgtat
gaacaatatcagaatttaatgagatcgcgtgacttcatcgactacgacgatatgatttta
gccgccctgcgcgtcctcgacaatgaaagcgcccgtcgcattgagcaaaatcaagttttt
gcagtatttgaagacgaagcccaagactctagccccttgcagacaaagctgttagagatt
ttagcaactaatcaagaatataattcttcactccctactccctactccccacttaaccta
gtgcgagttggtgatcctaatcaagcgattaactcaacttttacacctgctgatccgatt
tatttccgggagttttgcaaagagtgcgatcgccttggcaaattagcaacaatggatcaa
gctggacgcagtacccgaattatcattgcagccgccaacttcgccctagaatgggtaaac
agtttttatcaactcaaaaatcaaccatcccctccacccccttttcgtgatcaaaacatc
cgccccgttgatacagccgatcctcaaacaaatcctaacccagcaccagtgggacgagga
ctagaactttatacaccccgtgatatttatcacacagttgaattattgtcccaaagagtg
attgagttgtttactcaaaatcccaaagaaatgagtggggcaattttggtgcgagaaaat
cgccaaggacgctggctaggagaaatgttaactcctgtgtgtaaggagcataaaattaca
ctttatgacgtaggcgaaagcgatcgccgttctcatatcccccaagaaatgttgggatta
ctgcaattttgcgatcgcccccattctcctgacttccttaaagcggcgttagaagtattg
gtacagcgtcaattaattcctacccaagacctcaacgccctcgctagtttaccagaagaa
tttttatatccgggcccccttgcagaactccagacagatacagtccaaaaagccgcgcat
ttgtgtcggagtttactccgcgctcggttagaactacctctgtatcacctgattgccttt
ctcgccttaactttaaagtacgaccaagccgaattagcaactgctgacaaactctccgaa
cgggtaaaccagcaaataggtgagaacaattcaatggaagcaatgctctgtgctttaagt
gaaatcgtcacttcagaacggtttgaagcagtggaaacagatgatttagacgcgcgttat
acccgtggcggtcaactgacgattatcactatgcacaaagccaaagggttggattgggac
tatgtatttatgccctttttacatgaaaacttaattcctggtaaattttgggttcctccc
aaaagccagtttttaggtgactttactttatcagaagtagctcgcgcccaaattcggact
gcaatccacggcgaatcgaatatacctaatgtctcccatgggtgggaacaggcaaaacat
ttgaaaacctctgaggaatatcgtttactctacgtggcgatgacacgagccaagcggcta
ttgtggatgtctgcatcacagcaagcgccttttacctggaataaaccagaaaatttgcaa
gaacaagcgccttgtcccgtttttccggccttaaaacgtcagtttcctgaatgtgtagtt
actttggcaacttaa
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