Nodularia sphaerocarpa: BDGGKGIB_03136
Help
Entry
BDGGKGIB_03136 CDS
T08134
Symbol
pcrA_3
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03420
Nucleotide excision repair
nsph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDGGKGIB_03136 (pcrA_3)
03430 Mismatch repair
BDGGKGIB_03136 (pcrA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsph03400
]
BDGGKGIB_03136 (pcrA_3)
Enzymes [BR:
nsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDGGKGIB_03136 (pcrA_3)
DNA repair and recombination proteins [BR:
nsph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDGGKGIB_03136 (pcrA_3)
MMR (mismatch excision repair)
Other MMR factors
BDGGKGIB_03136 (pcrA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_30
AAA_12
DUF1978
ResIII
Terminase_6N
AAA_22
DUF5382_N
CarD_TRCF_RID
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ULP73482
LinkDB
All DBs
Position
3778901..3781225
Genome browser
AA seq
774 aa
AA seq
DB search
MTTTTDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVDPEHILA
VTFTNKAAREMKERIQRLFADDLAMKKHGQKFDLLTEYQQMQLRSQVYKNTIKDLWCGTF
HSLFSRILRFDIEKYQDEKGRRWNRNFSIFDESDVISLMKEIVNKQLNLDDKKFDARSVR
YAISNAKNQGLSPQEFEREQPNYRGRVIAQVYNCYQDKLAENNALDFDDLILVPTRLFQQ
NEQVLGYWHRKFKHILVDEYQDTNRTQYDLIRLLVTNGEDSKSAWEWQNRSVFVVGDADQ
SIYSFRMADFTILLEFQQEFGDGLADDDTRSMVKLEENYRSCENILQAANELIENNTQRI
DKVLKPTRGTGEQIYCHKADNEMEEAEFVIGQIRTLAQQNPELDWGSFAILYRTNAQSRP
FEELLMRNQIPYTVVGGMKFYDRKEIKDVIAYLRAIANPADTVSLLRVINTPRRGIGKAT
IESLVNASYELGTPLWEILSDETSVNTLAGRSAKAVNNFAKMISTCKEQAATVPVSELVQ
ELLNKSGYIQDLQNQGTDEAEDRIQNVQELYNAVLQFQEESEDVSLTAFLQSSALSSDLD
NLKEGQKAVSLMTLHASKGLEFPVVFLVGLEQGLFPGHRSLSNPESLEEERRLCYVGITR
AQERLYLSHARERRLYGSREPAMRSQFLNELPEELLNTRNKAGHRQTKTAAKAGGKPYTP
QTWQVGDRVLHKSFGIGEITHVFGQDNKVSVAVKFASLGQKIVDPRVAQLQRVD
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactactgactttctcagccatcttaaccccagccaacgtcaagctgtcgaa
cattactgcggccctttgttagttgttgctggcgcaggttcgggtaaaacacgagcgctg
acttatcgtattgctaatttgattcttaaacaccgtgtagatcctgagcatattctggct
gtcaccttcacgaacaaagccgcacgggagatgaaggaaaggattcaaaggctattcgct
gacgacttggcgatgaaaaaacatggtcaaaaatttgatttgttgacagaataccaacaa
atgcagttgcgatcgcaagtttataaaaatacgatcaaagacttgtggtgtgggactttt
catagtttattttcccggattctccggtttgatatcgaaaagtatcaagacgaaaaaggc
aggcgttggaatcgcaatttctcgatttttgacgaatccgatgtgattagtctaatgaaa
gaaattgtgaataagcaactaaatttagacgataaaaaatttgatgctcgttctgtgcgt
tacgcaatcagtaacgccaaaaatcaaggcttatcaccccaggagttcgagcgcgaacag
ccgaattatcggggaagggtcatcgcccaagtttataattgctatcaagataagttagca
gaaaataacgctctcgattttgatgatttgattctcgtgcctaccagattatttcagcaa
aatgagcaggttttaggttattggcatcgcaagtttaagcatatcctggtagatgaatat
caagatactaaccgcactcaatatgatttgattcggctgttggtgactaatggcgaagac
agcaagagtgcatgggaatggcaaaatcgctctgtgtttgtggtgggtgatgcggatcag
tcgatttacagtttccgaatggctgattttaccatattgctggaatttcagcaagagttt
ggcgatggtttagctgatgatgatacccgctcgatggtgaagctagaggaaaattatcgc
tcttgtgagaatattctgcaagcggctaatgagttaattgaaaataacactcaacgcatt
gataaggttctcaaaccgacgcggggaacgggtgagcagatttattgccataaagcagat
aatgaaatggaagaagccgagtttgtaattgggcaaattcgcactttagcacagcaaaat
ccggagttagattggggtagttttgccatactgtatcgtactaacgcccaatcacgacct
tttgaagaattgttaatgaggaatcaaattccttatacagttgtgggaggaatgaagttt
tacgatcgcaaagaaattaaagatgtcatagcttatttaagagcgatcgctaatcctgct
gatacagttagtttattgcgagtcattaatacaccccggcgcggaattggtaaagccacc
attgaaagcttagttaatgcttcctatgagttggggacacccctgtgggaaatactcagc
gatgaaacatcagttaatactttggctggacgttcggcgaaagctgtgaataacttcgct
aaaatgatcagcacctgcaaagaacaagccgcaacggttccagtttcggaacttgtgcaa
gagttgttaaataagtctggttatattcaagacttgcaaaatcaaggcacagatgaagcc
gaagatagaatccaaaacgtccaggaactttacaacgccgtattacaatttcaagaagaa
agtgaagacgtttctctcaccgcttttctgcaaagtagcgccctcagttcggatttggat
aatttaaaggaaggacaaaaagctgtatctttaatgactctgcacgcttccaaaggtctg
gaatttcccgtagtctttttggtagggttggaacaggggctatttcccggacaccgttct
ctgagcaacccagaatctttggaggaagaacgccggctgtgttatgtggggattactcgc
gcccaagaacggttatatttatcacacgctcgtgaacgccgcttgtatggttcgcgtgaa
ccggcgatgcgatcacaatttctcaacgaattaccagaagaactattaaatactcgcaat
aaagctggtcataggcagaccaaaactgctgctaaggctggcggtaagccttatacaccc
caaacttggcaagtaggcgatcgcgtcttacataaatcctttggtatcggtgaaattacg
cacgttttcggacaagataataaagtgtctgtggcggttaaattcgccagtttgggacaa
aaaattgttgaccccagggtggcgcagttgcaaagagtggactaa
DBGET
integrated database retrieval system
