Nodularia sphaerocarpa: BDGGKGIB_03261
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Entry
BDGGKGIB_03261 CDS
T08134
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDGGKGIB_03261 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsph03019
]
BDGGKGIB_03261 (recQ_1)
03400 DNA repair and recombination proteins [BR:
nsph03400
]
BDGGKGIB_03261 (recQ_1)
Enzymes [BR:
nsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDGGKGIB_03261 (recQ_1)
Messenger RNA biogenesis [BR:
nsph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BDGGKGIB_03261 (recQ_1)
DNA repair and recombination proteins [BR:
nsph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BDGGKGIB_03261 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_38
HTH_24
ResIII
GerE
HTH_5
HTH_11
HTH_7
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ULP73604
LinkDB
All DBs
Position
3913355..3915526
Genome browser
AA seq
723 aa
AA seq
DB search
MAMLQYPHLEQALKHNFGYDNFRPGQRQIIEDALENRDLLVVMPTGGGKSLCFQLPALIK
PGLTVVVSPLIALMQDQVESLRNNNISATFLNSSLNPHKVRSREEAIRNGKIRLLYVAPE
RLLSERFLPFLDLVHHQIGISTFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDVPTIAL
TATATDRVRGDIIQQLGLKQPSIHLASFNRQNLYYEVRPKSKSAYAEILELIRETDGSTI
IYCLTRKKVDELTFKLQNDKVVALSYHAGLSDEERSKNQTRFIRDDVRVMVATIAFGMGI
NKPDVRLVVHFDLPRNLESYYQESGRAGRDSEPSRCTMFFSFSDIKTIEWSINQKTDPQE
QLIAKQQLRQVIDYAEGTDCRRTIQLGYFGERFPGNCGNCDNCRYPKPVQDWTIEAMKFL
SCVARCQERFGMLHIIEVLRGSKSQKITQNKHDKLSTYGIGKDKTLDEWRMLGRSLLHQG
LLEQTNDGYSVLKLNALSWEVMKRQRTVSIAVPVAQKLSLVGEGDKAVEAELLLQRLRSL
RKELADEQSVPPYVVFQDSTLKLMAQAQPQTLADFGKLSGVGSHKLAQYGEKFLAEITAY
RQEKGEPAQKNYYPTSLSVNNSPNDSELVTLRLHQEGLSIPEIANKRNLSPSTILTHLSK
LMAKNQPVDINQLVPLEHQQKIWQVLEILGDISLTPVKEQLGENYTFDEIRLVREKWRRE
SRK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggccatgcttcagtacccgcatctcgaacaagcgctaaaacataactttggttacgat
aacttccgccccggacaacggcaaattattgaagatgcgctggaaaatcgggatttactg
gtggtaatgccgactggtgggggaaaatctctgtgctttcagttaccagctttgataaaa
ccaggtttaacggtagtggtttcaccgttaatcgctttgatgcaagaccaagtggaatca
ctgcgaaataataatatttcggcaacttttcttaatagcagtctgaatcctcataaggtg
cgatcgcgcgaagaagccatccgcaatggtaaaattagactactctacgttgccccagaa
cggctgttaagtgaaagatttctgccctttttagatttagtacatcatcaaatcgggatt
tctaccttcgccattgacgaagcccattgtgtctcggagtggggacatgacttccgtcca
gaataccgccagttgaaatccctgcgaaagcgatacccagatgttcccaccatcgccctc
accgctacagctacagatcgcgtccgtggtgatatcattcaacaattagggttaaagcaa
cctagcattcacctcgctagctttaaccgtcaaaatctttattacgaagttcgtcctaaa
tcgaagtctgcttacgccgaaatcttggaactgattcgggaaactgatggttccacaatt
atctattgtttaactcggaaaaaagtcgatgaactcacatttaaactgcaaaatgataaa
gttgtggctttgtcttatcatgctggtttaagtgatgaagaacgctcaaaaaatcaaact
cgatttattcgcgatgatgtgcgcgtcatggtggctacaattgcctttgggatgggaatt
aataagccagatgtgcgcttagttgttcactttgatttaccccggaatttagaaagttat
tatcaagaatcaggaagggcgggtagggatagcgaaccatcccgttgtacaatgtttttt
agttttagtgatattaaaactattgaatggagtattaatcaaaaaactgatcctcaagaa
caattaattgccaaacaacagctacgtcaggtaatagactatgctgaaggtacagattgt
cggcgcacaattcagttaggttattttggcgaacgttttccaggtaattgcggtaactgt
gataattgtcgttatcctaaacctgtacaagattggacaattgaagccatgaagttttta
tcttgtgtggcgcgttgtcaggaaagatttggaatgctgcacattattgaagtgttgcgc
ggttcaaaaagtcaaaaaattacacagaataaacacgataaactttctacctacggtata
ggtaaagataaaactttagatgaatggcgaatgttggggcgttctttattacatcaaggg
ttgttagaacaaaccaacgatggttactcggttttgaaacttaatgctttgagttgggaa
gtcatgaagcgacagcgcactgtttctattgctgttcctgtggcgcaaaaattgagttta
gtcggggagggtgataaagctgttgaggctgaattattattacagagattgcgatcgctc
cgcaaagaactcgctgatgaacagtctgtaccgccctacgttgtctttcaagattctacc
ctaaagttaatggcacaagcacaaccccaaactttagccgactttggcaaactttctggg
gtaggtagtcacaaactagcgcagtatggagaaaaattcctcgcagaaatcaccgcttac
cgtcaagaaaaaggtgaaccagcacaaaaaaattattatccaacttctctatctgtgaat
aattcaccgaatgatagtgaattagtgacattgaggctgcatcaagaaggtttgagtatt
cccgaaattgccaacaaacgcaatcttagcccctcgacaattctcacccatctttccaaa
ttaatggcgaaaaatcagcctgtagatataaatcagttagtaccgctagaacatcaacaa
aagatttggcaagttttagaaattctgggtgatatttccctaactccagttaaagaacaa
ttgggagaaaactatacttttgatgaaattcgcttagtcagggaaaagtggcgacgcgaa
agccgtaaatga
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