Nodularia sphaerocarpa: BDGGKGIB_03982
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Entry
BDGGKGIB_03982 CDS
T08134
Symbol
recQ_2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDGGKGIB_03982 (recQ_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsph03019
]
BDGGKGIB_03982 (recQ_2)
03400 DNA repair and recombination proteins [BR:
nsph03400
]
BDGGKGIB_03982 (recQ_2)
Enzymes [BR:
nsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDGGKGIB_03982 (recQ_2)
Messenger RNA biogenesis [BR:
nsph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BDGGKGIB_03982 (recQ_2)
DNA repair and recombination proteins [BR:
nsph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BDGGKGIB_03982 (recQ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ULP74318
LinkDB
All DBs
Position
complement(4730788..4732233)
Genome browser
AA seq
481 aa
AA seq
DB search
MNPSLKMSWQAVRNAFQQIWGYDDFRPPQGEIVSSLLAKKDALIIMPTGGGKSICFQLPA
LLQTGLTLVISPLVALMENQVQELLQRQQKAALLHSELPIHQRRATLQALERQQLRLLYL
SPETLLSAPVWEKLCNPNLQINGLILDEAHCLVQWGDTFRPAYRRLGAVRTALLKTKPPG
TKISIAAFTATADPAAQKTIQTVLQLQQPEIFRLNPYRPNLHFIVRIAWTPRSRKQQLLK
FIQKRPKQSGLIYVRARKDSEDLAVWLAEMGYTTASYHAGLSAAERRNVEAKWLSDKIPF
VICTGAFGMGINKSNVRWVVHFHAPLLMSEYVQEIGRAGRDGKPAEALALISEPTGLLDP
EDKRRQNFFDQQMRSQQETAQQLVKQLPKQGEINAVTREFRDASITLALLHSSGQLKWLD
PFHYTIDLGVKNQPMTQSQAAKQMQQYLHTKKCRWQFLLNAFGFDKEAANWRCGHCDNCR
D
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaatccatctttaaaaatgtcttggcaagccgtccgtaatgcctttcaacaaatttgg
ggttacgatgattttcgtccaccacaaggtgaaatcgtcagcagtttattagccaaaaaa
gacgcattgattattatgcctacaggtggtggaaaatcaatttgttttcaacttcccgca
ctgctacaaacaggattaactttagtaatttcgccgttggtagcactgatggaaaaccaa
gtccaagaattacttcagcgccaacaaaaagcagcacttttgcatagtgaattaccgatt
catcaacgccgtgctacattacaagctttagaaagacaacaactcagattactgtattta
tcccctgagactttattgagtgcgccagtctgggaaaaattgtgtaatcccaacttacaa
attaatggtttgatattagatgaagctcattgtttagtacagtggggagatacatttcgc
ccagcttatcgcagattaggcgctgtcagaactgcactactgaaaaccaaaccaccagga
acaaaaattagtattgcggcttttaccgctactgctgaccccgcagcccaaaaaactatt
caaacagttttacaattacagcaaccagaaatttttagattgaatccctaccgcccaaat
ttacattttattgtccgcatagcttggactccacgcagtagaaaacagcaattattaaag
tttattcaaaagcgccccaaacaatcgggattaatttatgttcgggctagaaaagatagc
gaagatttagctgtatggttagcagagatgggttacactacagctagttatcatgcagga
ttgagtgcagcagaacgccgcaatgtagaagctaaatggttaagtgataaaattcctttt
gttatctgtaccggtgcttttggtatggggataaataaatcaaatgttcgttgggtggtt
cactttcacgcccctctcctgatgtctgaatatgtgcaagaaattggccgcgcgggacga
gatggaaaaccagccgaagcgctggctttaatcagtgaacctacgggtttgttagatcca
gaggataagcgaagacaaaatttctttgatcaacaaatgcgatcgcaacaagaaacagcg
cagcaattggtgaaacaattacccaaacaaggtgaaataaatgctgtaactcgtgaattt
cgtgatgcttctatcaccttggctttactccacagcagtggtcaattaaaatggcttgat
ccttttcattacactattgatttaggggtgaaaaatcagccaatgacacaatcacaagct
gctaaacaaatgcagcaatatttgcatactaaaaaatgtcgttggcaatttttattaaat
gcttttggttttgacaaagaagctgctaactggcgttgcggacattgtgataattgtcga
gattag
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