Nocardia sputorum: IFM12276_04210
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Entry
IFM12276_04210 CDS
T09151
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IFM12276_04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nspu03400
]
IFM12276_04210
Enzymes [BR:
nspu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IFM12276_04210
DNA repair and recombination proteins [BR:
nspu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IFM12276_04210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BDT97392
UniProt:
A0ABM8CR34
LinkDB
All DBs
Position
430536..432833
Genome browser
AA seq
765 aa
AA seq
DB search
MAARREFGGIEVDLSNLDKVLYPATGTTKGEVIAYYSAIAPAMLPHIAGRAVTRKRWPNG
VDEPSFFEKNLPAHAPSWIERRALRHSDRKVVYPLIDSEAGLAWLAQQAALEVHVPQWRF
DDDDMGPATRLVFDLDPGEGVGLAECAEVALAVREMVEGIGLRAFPVTSGSKGIHLYVPL
DRDLSSDGASTVAKQVATNLQRLRPDLVTATMAKAARGGKVFLDWSQNNAAKTTIAPYSM
RGRPEPNAAAPRTWKEIENRKKLRQLRFDEVLARYRADGDLLAELDAAPAGDDSSGTAPD
ALTKYRSMRDPSRTPEPVPAQAPAPGENNRYVVQEHHARRLHWDVRLERDGVLVSWAVPK
GPPTSPEQNRLAVHTEDHPMEYLDFHGAIPKGEYGAGEMTIWDSGTYETEKWRDDEVIVR
FHGRRLTGRYALIQTNGNQWLMHLMRAQNGAEPQEEEPDEPQGRIIRPSGGPAPLPRGLS
PMLATHGDVAELGAAEWCFETKWDGFRLIAEIESGAITLRSRAGHVVTDRYPGIAALRRE
LSGHQVVLDGEAVVFDDHGVANLGLLQADAARAVFVAFDVLYLDGTSLLRKRYADRRRVL
EALAANAPSLVVPPRLDGSGADALRYSQEHGLEGVVAKRKDSVYLPGKRGHAWVKQRNWR
TQRVLIGGWRRSSAREFKSLLVGIPHDGRLVYVGRVGTGFDDSNLRELAARLRPLERKTS
PFDNDLTAEERKEAVWVTPKLGGTVRFMNWTETGRLWHPAWLGAG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgccgcgagttcggtggtatcgaggttgacctgagcaacctcgacaaggtg
ctgtacccggccaccggaacgacgaaaggcgaagtgatcgcctactattcggcgatcgcg
ccggccatgctgccgcacatcgccgggcgggcggtgacccgcaagcgctggccgaacggc
gtcgacgaaccgtctttcttcgagaagaacctcccggcgcatgctccgtcctggatcgag
cggcgcgccctgcggcattccgatcgcaaggtcgtctacccgctgatcgattccgaagcc
ggactggcttggctcgcgcagcaggccgcgttggaagtccatgtgccgcagtggcgtttc
gacgacgatgacatgggtccggcgaccaggctggtcttcgatctggatcccggcgagggg
gtcgggctcgccgaatgcgccgaggtggcgctcgcggtgcgcgagatggtggagggcatc
ggtctgcgcgccttcccggtgaccagtggcagcaagggcatacacctctatgtgccgttg
gatcgcgatctgagctccgacggcgcgtccaccgtggcgaaacaggtggccacgaatctg
caacggctgcgtccggacctggtcacggcgacgatggcgaaggcggcgcgcggcggcaag
gtcttcctggactggagccagaacaacgccgccaagaccaccatcgcgccctactcgatg
cgggggcggccggagccgaatgccgccgcgccacgcacgtggaaggagatcgagaatcgc
aagaagctgcggcagttgcggttcgacgaggtgctggccaggtaccgcgccgacggcgat
ctgctcgccgaactggatgccgcgccggcgggggatgattcgtccgggacggctcccgac
gcgttgacgaagtaccgctcgatgcgtgacccgtcccgcaccccagagccggttcccgcg
caggcgcccgcgccgggggagaacaatcgctacgtcgtgcaggagcatcacgcgcggcgc
ctgcactgggatgtgcggctggagcgcgacggggtgctggtgtcctgggcggtgccgaag
ggtccgccgacctcgcccgagcagaaccgcctcgccgtgcacaccgaggaccacccgatg
gagtatctcgacttccacggcgccatcccgaagggtgagtacggcgcgggcgagatgacg
atctgggactccggcacctacgagaccgagaagtggcgcgacgacgaggtcatcgttcga
ttccacggcaggcggctcaccggccggtacgcgctgatccagaccaacggcaatcagtgg
ctgatgcatctgatgcgtgcgcagaacggcgccgaaccgcaggaggaggagccggacgaa
ccgcagggccggatcatccgtccgtccggcgggcccgcgccgctgccgcgcggtctgtcg
ccgatgctcgcgacgcacggtgacgtcgccgaactcggcgccgccgagtggtgcttcgag
acgaagtgggacggcttccggctgatcgccgagatcgagtccggcgcgatcacgctgcgc
agccgggcgggccacgtcgtgaccgaccgctatcccggcatcgcggcgttgcggcgggag
ttgtccggacatcaggtggtgctggacggcgaggccgtcgtgttcgacgatcacggcgtc
gcgaatctgggtctgctgcaagccgatgcggcgcgggcggtgttcgtcgccttcgacgtg
ctgtacctggacggcacctcgctgttgcgcaagcgctacgccgaccgccgcagggtgctg
gaggcgctcgccgccaacgcgccgtcgctggtcgtgccgccgcgcctggacggctcgggc
gccgacgccttgcgctacagccaggagcacgggctcgagggcgtggtcgccaagcgcaag
gactcggtgtatctacccggcaagcgcgggcacgcctgggtgaagcagcgcaactggcgc
acgcagcgggtgctgatcggcggctggcggcgcagctcggcacgggaattcaagtccctg
ctggtcggcattccacacgacgggcggctggtctatgtcggacgggtcggcaccgggttc
gacgactcgaacttgcgggagctggccgcgcggctgcgcccgctggaacgcaagacttcg
ccgttcgacaacgacctgaccgccgaggaacgcaaggaagcggtgtgggtgacgccgaaa
ctcggtggcaccgtgcggttcatgaactggaccgagacgggccggttgtggcacccggcg
tggctcggcgctgggtag
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