Nocardia sputorum: IFM12276_05160
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Entry
IFM12276_05160 CDS
T09151
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IFM12276_05160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nspu03400
]
IFM12276_05160
Enzymes [BR:
nspu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
IFM12276_05160
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IFM12276_05160
DNA repair and recombination proteins [BR:
nspu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IFM12276_05160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
TniQ
Cas12f1-like_TNB
DUF7129
Motif
Other DBs
NCBI-ProteinID:
BDT97487
LinkDB
All DBs
Position
608519..609418
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AA seq
299 aa
AA seq
DB search
MSGALGSLDRVPELPEVEALAQFLREHAVGAVVGRVDVAALSAVKTFEPPVTALSGRDVT
GAGRWGKFLGMECDGLWLVTHLSRGGWLRWIDEPSPTPPKPGGKSPLALRVHFFTPEGAT
PAFDLTEAGTKKRLAVYVVADPKVVPGIARLGPDALELTESQFADILRGTSQRIKTALVD
QALLAGVGNAYSDEILHTARISPFANTKTLPADKVAELYTALRTVLTDAVRRSVGQDAAR
LKGEKRSGMRVHARTGQPCPVCGDTVREVAYAERSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgggggcgctgggtagtctggaccgcgtgccagagctaccggaagtggaggcgttg
gctcagttcctccgggagcatgcggtcggcgccgtggtcggtcgtgtcgacgtggccgcg
ctgagcgccgtcaagacgttcgaaccgccggtcaccgcgctgtccggtcgagacgtcacc
ggcgcggggcgctggggcaaattcctcggtatggaatgtgacggcttgtggctggtcacg
catctgtcccgcggcggatggctgcgctggatcgacgagccgagcccgacgccgcccaaa
ccgggcggcaagagcccgctcgcgctgcgcgtgcatttcttcacccccgagggggcgacg
cccgcgttcgacctgaccgaggccggcacgaagaaacggctcgcggtgtacgtcgtggcc
gaccccaaggtggtgcccggcatcgcccggctcggccccgacgcgctggagctgaccgag
tcgcagttcgccgacatcttgcgggggacctcgcagcggatcaagaccgcgctcgtggac
caggcgctgctggcgggcgtcggcaacgcctactccgacgagatcctgcacaccgcgcgg
atctcgccgttcgcgaacacgaagacccttccggccgacaaggtggccgagctgtacacc
gccctgcgcacggtgctcaccgacgcggtacgccgctcggtcggccaggacgccgcccgc
ctcaaaggcgagaagcgctccgggatgcgggtgcacgcccggaccgggcaaccgtgcccg
gtctgcggcgacacggtccgcgaggtggcctacgccgagcggtccttccagtactgcccc
acctgtcagaccggcggtaaggtcctcgcggaccggcggatgtcgcgtttgctgaaatag
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