Nocardia sputorum: IFM12276_08790
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Entry
IFM12276_08790 CDS
T09151
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IFM12276_08790 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nspu03019
]
IFM12276_08790 (deaD)
03009 Ribosome biogenesis [BR:
nspu03009
]
IFM12276_08790 (deaD)
Enzymes [BR:
nspu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IFM12276_08790 (deaD)
Messenger RNA biogenesis [BR:
nspu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IFM12276_08790 (deaD)
Ribosome biogenesis [BR:
nspu03009
]
Prokaryotic type
rRNA helicases
IFM12276_08790 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
BDT97850
LinkDB
All DBs
Position
complement(984968..986755)
Genome browser
AA seq
595 aa
AA seq
DB search
MSTNQVDSVSGDNDRDTDGPSFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADV
VGLAQTGTGKTAAFAIPILMGLEATGRTPRALVLAPTRELAIQVAEAFGRYAAHIPGLHV
LPIYGGQSYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGF
QEDVERILADTPSDKQVALFSATMPAAIRKISKQYLHDPVEITVKAKTSTATNISQRWVL
VSHQRKLDALTRVLEVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQRER
TIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERHLLKSIERATRHPLTEMQLPSVEDVNAQRVTKFGDAITENLTSANLPLFRKL
IEDYEREHNIPLADIAAALAVGSYDGDNFFMEPEPEPVERPQRDRTPRERPARRFDEPVG
GSHHRATGTELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPA
QLPEETLEALRRTRISGVLIQLQLDQGAPQHRTFSRGQRRERESGKRPERRKPRS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaatcaggtcgacagcgtttctggcgacaacgacagggacaccgacggcccg
tctttcgccgatctggggatcgatgaccgcatcctcgcggccatcgccgacgtcggttac
gaatcgccgtcgcctattcaggccgcgacgattcccccgctgctctccggcgccgacgtc
gtcggtctcgcgcagaccggcaccggcaagaccgccgcgttcgccattccgatcctgatg
gggctcgaagccaccggccgcactccgcgcgccctcgtgctcgccccgacccgagagctc
gcgatccaggtcgccgaggcgttcggccgctacgccgcgcacatcccggggctgcatgtg
ctgcccatctacggcggacagagctacggcgtgcagctgtcgggcctgcgccgcggtgcg
cacgtcgtggtcggcactccgggccgggtgatcgatcacttggagaagggcacgctcgac
ctgtcgcagctgcagtatctggtgctggacgaggccgacgagatgctcaagatgggcttc
caggaggacgtcgagcgcatcctcgccgacactccgtcggacaagcaggtggcgctgttc
tcggcgaccatgcccgccgcgatccgcaagatctccaagcagtacctgcacgatccggtg
gagatcacggtcaaggccaagacctcgacggccaccaacatctcccagcgctgggtattg
gtgtcgcatcagcgcaagctggacgcgctcacccgggtgctcgaggtggagtcgttcgag
gcgatgatcatcttcgtccgcaccaagcaggccaccgaggaactcgccgagaagctgcgc
gccaggggcttctccgccgccgcgatcaacggcgacatcgcgcagaaccagcgcgaacgc
accatcggccagctcaagtccggcgccttggacattttggtcgccaccgacgtggccgcg
cgcgggctggacgtggaccgcatctcgcacgtggtcaactacgacatcccgcacgacacc
gagtcctacgtgcaccgcatcggccgcaccggccgggccgggcgcagcggcgaggcgctg
ctgttcgtcgcgccgcgcgagcggcacctgctcaagtcgatcgagcgggccacccgccac
ccgctgaccgagatgcagctgcccagcgtggaggacgtcaacgcccagcgcgtgacgaag
ttcggcgacgccatcaccgagaacctcacctcggcgaacctgccgctgttccgcaagctg
atcgaggactacgagcgcgagcacaacatcccgctggccgacatcgccgcggcgctggcg
gtgggctcctacgacggcgacaacttcttcatggagcccgagccggagccggtggagcgc
ccgcaacgcgaccggaccccgcgcgagcggcccgcccggcgtttcgacgaaccggtcggc
ggttcccaccaccgcgccaccggaaccgagctggcgacctaccggatcagcgtgggcaag
cgccatcgcgtggtgcccggcgcgatcgtcggcgccatcgccaacgaaggcggcctgcgc
cgcagcgacttcgggcacatcagcatccgtcccgaccacagcctggtggaactgcccgcc
cagctgccggaggagacgctggaggcgttgcggcgcacgcggatcagtggtgtgctcatc
cagttgcaactggatcagggcgcgccgcagcatcgcacgttcagccgcggccagcgccgg
gagcgcgaaagcggcaagcggccggagcgccgtaagccacggtcctga
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integrated database retrieval system
