Nocardia sputorum: IFM12276_11610
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Entry
IFM12276_11610 CDS
T09151
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IFM12276_11610 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nspu03019
]
IFM12276_11610 (recQ_1)
03400 DNA repair and recombination proteins [BR:
nspu03400
]
IFM12276_11610 (recQ_1)
Enzymes [BR:
nspu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IFM12276_11610 (recQ_1)
Messenger RNA biogenesis [BR:
nspu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IFM12276_11610 (recQ_1)
DNA repair and recombination proteins [BR:
nspu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IFM12276_11610 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
BDT98132
LinkDB
All DBs
Position
1287255..1289138
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AA seq
627 aa
AA seq
DB search
MGRVTPPDDFAAVATEVVSGSDAGSVAAQEVLRRVFGYDSFRGDQQAIVQHVIDGGDALV
LMPTGGGKSLCYQVPALVRPGVGVVVSPLIALMQDQVDALSALGVRAGFLNSTQYPDERR
TIEAQFVAGELDLLYLAPERLRLESTAQLLDRGKVALFAIDEAHCVSQWGHDFRPDYLGL
SLLHERWPDVPRIALTATATEKTRDEIIQRLDLGAARRFVSSFDRPNIQYRIEPKNRPER
QLLEFIRAEHPGDAGIVYCLSRNSVEKTAAFLTENGVTAVPYHAGLDNRTRAENQSRFLR
EDGLVVVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMVYGLSD
VVQQRKLIDSSEGDAAHRRQLQLHLDAMLALCETVGCRRTQLLAYFGEPGLPCGNCDTCL
SPPQSWDGTVAAQKLLSTVLRLKRERGQSFGAGHIVDILLGKKNPKVLQHDHHELKVFGV
GTDLRDTEWRGVVRQLLAHGLLAVHGDYGVLTLTEASSEVLFDGRQVLLRREPERATKPA
RAAKAAKAASVDLAPTDLPLFEKLREWRAATAKEQGVPAYVVFHDATLREIAARKPASLA
QLGGVSGVGENKLTKYGEQVLEVLAAG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggtgactccccccgatgatttcgcggctgtagcgaccgaagtcgtgtccggt
tcggacgccggatccgttgcggcgcaagaggttctacgccgagtcttcggttacgacagc
ttccgtggcgaccagcaggcgatcgtgcagcacgtgatcgacggcggcgacgcgctggtg
ctcatgccgaccggcggcggcaagtcgctgtgctatcaagtccccgcgctggtgcgcccc
ggcgtcggggtggtggtctccccgttgatcgccctcatgcaggaccaagtggacgcgctc
agcgcgctgggcgtgcgcgcgggcttcctcaactccacccagtaccccgacgagcgccgg
accatcgaggcgcaattcgtcgcgggggaactcgatctgctctatctcgcgccggagcgg
ttgcggctggagtccaccgcgcagctgctggatcgtggcaaggtcgcgctgttcgccatc
gatgaggcgcactgcgtgtcccagtggggtcacgacttccggcccgattacctgggtctt
tccctgctgcacgaacggtggccggacgtaccgcggatcgcgctgaccgcgaccgccacc
gagaagacgcgcgacgagatcatccagcggctcgatctgggtgccgcccgccggttcgtc
tccagcttcgaccgccccaacatccagtaccggatcgagccgaagaaccgccccgagcgt
cagttgctggaattcatccgcgccgaacaccccggcgacgcgggcatcgtctactgcctc
tcgcgcaactcggtggagaagaccgcggcgttcctcaccgagaacggcgtcaccgcggtg
ccctaccacgcggggttggacaatcgcacccgcgcggagaaccagtcgcgcttcctgcgc
gaagacggtttggtggtcgtggcgaccatcgccttcggcatgggcatcgacaaacccgat
gtacgtttcgtcgcccacctcgacctgccgaaatcggtcgaagggtattaccaggagacc
ggccgcgccggccgcgacgggctgccctccacggcgtggatggtctacggcctcagcgac
gtggtgcagcagcgcaagctgatcgactcctccgaaggggacgccgcgcaccgccgccag
ctccagctgcacctggacgcgatgctcgcgctgtgcgagacggtcggctgccggcgcacc
cagctactcgcctacttcggtgagcccggcttgccctgtggcaactgcgacacctgcctg
tccccaccgcaatcctgggacggcaccgtggccgcgcagaagttgctgtccacggtgctg
cggctgaagcgcgaacgcggccagagcttcggggcagggcacatcgtggacatcctgctc
gggaagaagaaccccaaggtcctgcagcacgaccaccatgagctgaaggttttcggtgtc
ggtaccgacctgcgcgacacggagtggcgcggggtggtgcggcaactgctggcgcacggg
ctgctggccgtccacggcgactacggggtcctgacgctcaccgaggcaagcagcgaggtg
ctgttcgacgggcggcaagtactgctgcgccgcgagcccgagcgcgcgaccaagcccgcg
cgggcagcgaaggccgccaaggcggcttccgtagacctggcacccaccgacctgccgctg
ttcgagaagttgcgcgaatggcgcgcggccaccgcgaaggaacagggcgtgccggcctat
gtcgtcttccacgacgccaccctgcgcgagatcgcggcgcgcaagcccgcgagcctcgcc
cagctgggcggcgtcagcggtgtcggcgagaacaagctcacgaaatatggcgaacaggtg
ctcgaagtgctcgccgccggatga
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