Nocardia sputorum: IFM12276_18060
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Entry
IFM12276_18060 CDS
T09151
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
nspu
Nocardia sputorum
Pathway
nspu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IFM12276_18060 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nspu03021
]
IFM12276_18060 (rpoD)
Transcription machinery [BR:
nspu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IFM12276_18060 (rpoD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
BDT98777
UniProt:
A0ABM8CUW8
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All DBs
Position
complement(1950575..1951954)
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AA seq
459 aa
AA seq
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MVATNTRQTAESADADSADVTAARPVRKAAAKKAPAKKAAAKKAPAKKAAKAAKAPAKKA
TTKKAGPDGEPGADEALEDESLDLDDLGDLEVSEEDLADGDELVDVAEEAETEEAEGEEA
DEPTAADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL
AKRIEAGLYAAEKVREFAEQGEKLPVAMRRDYNWIVRDGNRAKNHLLEANLRLVVSLAKR
YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP
VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD
EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTL
DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtggtagccacgaatacccgtcagaccgccgaatcggccgatgccgactccgcagatgta
accgcagcacggccggtccgtaaggctgctgcgaagaaggctccggcgaagaaggccgcc
gccaagaaggcgcctgccaagaaggccgcgaaggcggccaaggctcccgcgaagaaggcc
acgaccaagaaggcgggcccggacggcgagcccggcgccgacgaggcgctcgaggacgag
tcgctcgatctcgacgatctcggcgatctggaggtctccgaggaagacctcgccgacggc
gacgaactggtcgacgtcgccgaggaagccgagaccgaggaagccgagggcgaggaagcc
gacgagccgacggcggcggacaaggcctccggcgatttcgtctgggacgaggaggaatcc
gaggcgctgcgccaggcccgcaaggacgccgaactcaccgcctccgccgactcggtccgc
gcctacctcaagcagatcggcaaggtcgcgctgctcaacgccgaagaggaggtcgaactc
gccaagcggatcgaggcaggcctctacgcggcggagaaggtgcgcgagttcgccgagcag
ggtgagaagctgccggtcgcgatgcgccgcgactacaactggatcgtccgcgacggcaac
cgggccaagaaccacctgctggaggccaacctgcgcctggtcgtctcgctggccaagcgc
tacaccggccgcggcatggcgttcctcgacctgatccaggagggcaacctgggtctgatc
cgcgcggtggagaagttcgactacaccaagggctacaagttctccacgtacgccacctgg
tggatccggcaggccatcacccgcgccatggccgaccaggcccgcaccatccgcatcccg
gtgcacatggtggaggtcatcaacaagctcggtcgcatccagcgcgagttgctccaggat
ctcggtcgcgagccgacgccggaggaactggccaaggaaatggacatcacgccggagaag
gtgctggagatccagcagtacgcgcgtgaacccatctcgctggaccagaccatcggcgac
gagggcgacagccagctcggtgacttcatcgaggactccgaggccgtggtggccgtcgac
gcggtgagcttcacgttgctgcaggatcagctgcagtcggtgctggagacgctgtcggag
cgggaggcgggcgtggtccggctgcggttcggtctcaccgacggccagccccgcactctc
gacgagatcggccaggtctacggggtcacccgcgaacgcatccgccagatcgagtccaag
accatgagcaagctgcgccaccccagccgctcccaggtcctgcgcgactacctggactag
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