Nocardia sputorum: IFM12276_21540
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Entry
IFM12276_21540 CDS
T09151
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IFM12276_21540 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nspu03400
]
IFM12276_21540 (recD)
Enzymes [BR:
nspu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IFM12276_21540 (recD)
DNA repair and recombination proteins [BR:
nspu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IFM12276_21540 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
RecD_N
Helicase_RecD
AAA_22
SH3_13
T2SSE
Mg_chelatase
ResIII
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
BDT99125
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All DBs
Position
2301137..2303026
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AA seq
629 aa
AA seq
DB search
MTSIQVAQRGTGLLRTFNEAGVLSAADVHVALRLGRLGRESSEPVLFAAALAVRAVRSGS
VCLELHRMREIGVDADETWDAGVDPAALPWPDIPAVVAALRASPLVRGGPAGPLRPLRLV
ESHGPGDSGPLLYLDRYYRQEQTIRRVLTERSAHHPAVDPRIVRRELDRLFDATAGTAPD
RQRLAAALAATHWTTVVAGGPGTGKTHTIARIIALLSAHREAEPKLPALRIALAAPTGKA
AARLQEAVREQAASLGLPELTAATLHRLLGWQRGRSTRFKYHEFNRLPYDVIVVDETSMV
SLTMMSRLLAALRPDTRLVLVGDPDQLASVDAGAVLADLVAGPVAATANPVLDEILGPES
VSEHAESLTALERTRLRGGIVRLTRGRRFGGRIADLAVAVRAGDADAALELLRGGGAELS
LSAPEELAAVRADVVRAATAVTAAALDGDAAGALTALESHRLLCAHRQGPFGVERWDRMA
AEWAAAGGAGPDSHQAPWYPGQPLLVTANDHEARIYNGDTGVVVRMPDGSLRAALQRGSE
PYLVHPTQFPAVVTVFAMTIHRSQGSQYDTVSVVLPEPESTLLTRELLYTAITRARRHVR
IIGTDESIRAGIARRVLRASGLSRREEVR
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgatccaagtggcgcagcgggggacaggactgctgcgcacgttcaacgaggcg
ggagtgctgtcggcggcggacgtgcacgtggccctgcgcttgggccggctgggccgggaa
tcatcggagccggtgctgttcgccgcggcgctggccgtgcgcgcggtgcgctccggctcg
gtgtgcctggaactgcaccggatgcgggagatcggcgtcgacgccgacgaaacctgggac
gcgggcgtcgatccggcggcgctgccgtggccggacatcccggcggtggtcgccgcgctg
cgtgcgagcccgctggtgcgcggtggaccggccggtccgttgcgaccgttgcgactggtc
gaatcgcacgggccgggcgactccggcccgttgctctacctcgatcgctactaccggcag
gagcagacgatccgtcgggtgctgaccgagcgatccgcgcaccatccggcggtggatccc
cggatcgtgcgtcgcgaactggaccggttgttcgacgcgaccgcgggcaccgcgccggat
cgccagcgtctggccgccgcgctggccgcgacccactggaccaccgtggtcgccggtggg
ccgggcaccggcaagacccacaccatcgcccggatcatcgccttgttgtccgcgcaccgc
gaggccgagccgaagttgcccgcgctgcgcatcgcgctggccgccccgaccggcaaagcg
gcggcgcgcctgcaggaagccgtgcgcgagcaagcggcgtcgctcggactgcccgaactc
accgccgccacgctgcaccggctgctcggctggcagcgcgggcgcagtacccggttcaaa
taccacgagttcaatcggttgccctacgacgtgatcgtggtggacgagacctcgatggtc
tcgttgacgatgatgagcaggttgctggccgcgctgcgcccggacacccgcctggtcctg
gtcggcgaccccgaccagctggcctcggtcgacgcgggcgctgtgctcgccgacctggtc
gccggaccggtcgccgccacggcgaatcccgtcctggacgaaatcctgggcccggagtcg
gtttccgagcacgcggagtccttgaccgcgttggagcgcacccgcctgcgcggcggcatc
gtgcggctgacccggggccgcaggttcggcggccggatcgccgacctggccgtcgcggtg
cgggccggggacgcggacgccgcactcgagctgttgcgcgggggcggtgcggaattgtcg
ctcagcgcgccggaggaactggccgcggtgcgtgccgacgtggtgcgggccgccaccgcg
gtcaccgccgccgcgctcgacggcgacgcggccggcgcgctcacggcgctggaatcacat
cgtctgctgtgcgcgcaccggcaggggccgttcggcgtcgaacgctgggaccggatggcc
gcggagtgggccgccgccggcggagcgggccccgattcgcaccaggcgccgtggtacccc
ggccagccgctgctggtcaccgcgaatgatcacgaggcgcggatctacaacggtgacacc
ggcgtggtcgtccgcatgcccgacggctcgctgcgcgcggcgctacagcgcggcagcgaa
ccgtatctggtgcatcccacgcagttccccgccgtggtcaccgtcttcgccatgaccatc
catcgcagccagggcagccagtacgacacggtctccgtcgtcctgcccgagccggaatcg
acgctgctgacgcgggaattgctgtacaccgcgatcaccagagcgcgccgtcacgtccgg
atcatcggcaccgacgagtccatccgcgccggtatcgcacggcgggtgttgcgcgccagc
gggctgtcgcgacgagaagaggtccggtga
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