Nocardia sputorum: IFM12276_35150
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Entry
IFM12276_35150 CDS
T09151
Symbol
lig_1
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IFM12276_35150 (lig_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nspu03400
]
IFM12276_35150 (lig_1)
Enzymes [BR:
nspu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IFM12276_35150 (lig_1)
DNA repair and recombination proteins [BR:
nspu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IFM12276_35150 (lig_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BDU00487
LinkDB
All DBs
Position
complement(3842370..3843389)
Genome browser
AA seq
339 aa
AA seq
DB search
MWRVDLGGVGGHGGPVGQEEVRHGVAMSNLDQPLFDGAEATKRDLIDYLEAVGERLVAVL
RDRPLSVVRIRPGQPAFMQKNLPKYTPEWVRRVTVWAESSRREISYALCDDVRTLLWFGN
QRAVEYHPTLLPADHALGPTHLVLDLDPSPGQTFRHAADAAKLIRTALANDGLAGAVKTS
GAKGVHVFVPVEPGTPVEDAAAATRAIAARAERLDPDLATTAFIKEDRAGKVFLDSTRAG
GATVVAAYSPRIRPGTPVSFPLTWSQLDEVTPTDFTLRPALTRLADRDPWRTEMPAPQRL
PDDLIAEGHTIPVARVQAMHEGKRRARARRAGADTPPSG
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
gtgtggcgggttgacctcggtggcgtgggcgggcatggtggcccggtgggccaggaagag
gtgcgccacggtgtggcgatgtccaatctcgatcagccgctgttcgacggtgcggaggcg
accaagcgggatctgatcgactatctcgaggcggtcggggagcggctggtcgctgtattg
cgcgaccggccgctgtcggtggtgcgaatccggcctggtcagcccgcgtttatgcagaag
aacctgccgaagtacacgccggagtgggtccggcgggtgacggtgtgggcagagagttcc
cggcgcgagatctcctatgcgttgtgcgacgacgtgcgcaccctgttgtggttcggcaat
cagcgcgcggtggagtaccacccgacgctgctgcccgccgaccatgctctcggtccgaca
catctggtgctcgacctcgatccctcacccgggcagaccttccggcacgccgcggacgcg
gcgaagttgatccgtacggcgctggcgaacgacggtttggcgggtgcggtgaagaccagt
ggcgcgaaaggcgtgcacgtgttcgtcccggtcgagccgggcacgccggtcgaggatgcc
gccgcggccactcgcgcgatcgcggcccgagccgagcggctggacccggacctcgccacc
acggcgttcatcaaagaagaccgtgcggggaaggtgttcctcgactcgacgcgcgcgggt
ggcgcgactgtggtcgcggcctacagtccccgtatccgccccggaacgccggtgtccttc
ccgctcacgtggtcgcagctcgacgaggtgacgccgacggacttcactctgcgacccgcg
ctgacccggctggcggaccgcgatccttggcgaaccgaaatgcccgcgccgcaacggctt
ccggacgatttgatcgccgagggccacaccatcccggtggcccgggtgcaggcgatgcac
gagggtaaacggcgcgcccgcgcgcgccgtgcgggtgcggacacgccgccctccggctga
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