Nocardia sputorum: IFM12276_48630
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Entry
IFM12276_48630 CDS
T09151
Name
(GenBank) putative ribonuclease E Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IFM12276_48630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nspu03019
]
IFM12276_48630
03009 Ribosome biogenesis [BR:
nspu03009
]
IFM12276_48630
Enzymes [BR:
nspu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IFM12276_48630
Messenger RNA biogenesis [BR:
nspu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IFM12276_48630
Ribosome biogenesis [BR:
nspu03009
]
Prokaryotic type
rRNA processing factors
IFM12276_48630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BDU01835
LinkDB
All DBs
Position
complement(5309422..5312574)
Genome browser
AA seq
1050 aa
AA seq
DB search
MADQEPLDTTSQDAEQLPERIRVHALAKLLGVTSKRILAKLTEMGADARSAQSNVDRAVA
ESVRDALVTVEADAAEQPAVGQAEPPAPPQAAEPAADAATPAEPPEPPRAAEADASFTGT
GVIFSAPDVPSATQPSTGAAAHHTQLFTHSVRPEAEPVTPAVFESAAVVQAPLFLSPDAA
AAEQARRQRRAERETRHTEQQAPEPAEDETEVEDERESDQQGEADGQPRRRRRGRRGRGR
GRGEQQSEADGDGEDNDDETETETVDESAPAASEPAEAESAETGDGEDEDGVPEGSSRRR
RRRRRRKVAGESGENEASDDDPPNTVVHEREPRNKTRSRAASDEVQGITGSTRLEAKRQR
RRDGREAGRRRPPILTESEFLARREAVDRVMVVREKSFPDHPTATQVAVLEDNVLVEHFV
TSTGSASMVGNVYLGKVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGKERKIEQ
ALKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKE
ILRDIVPADAGVIIRTASEGVSETELARDVERLQATWRTIQQQTGKDNNAPKTLYEEPDL
LVKVIRDLFNEDFSKLVIEGDRAWSTVEKYIGTVAPDLLARVNRHENNGVDVFETYRIDE
QLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGSNLEETVTRNNLEAAEEIV
RQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKK
LGTGLVEAFSTTCEHCHGRGILVHTYPVEPGSGEETAGRTRESGSRRRRGRDKGAAAPAQ
PANGSGPAPEHPEEEAAVKRAHPVALAMAAHQSDEPEQAEDAVEPRVAVADESAAERVVT
ETVEAAVAVPAEEPETEPAEVVEVIEEVEKVEPVPAEEPVSVAESAPAAEPEPVAEPVSA
AEPVPASETGAAANGVAAPAARPARRRRVARSAAAPAADSSGAVFVLPTGDQAPAPAIDY
SQPEAAELPQRNRPRRRAVGRPAGAPEAPN
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagagccgctggatacaacatcacaggatgccgaacaattgccggagcga
atccgagttcacgcactcgccaagctgctgggggtaacgagcaagcgcatcctggccaag
ctgaccgagatgggggcggacgcgcgcagcgcgcagtcgaacgtcgaccgcgcggtcgcc
gagtcggtgcgcgacgccttggtgacggtcgaggccgatgccgccgagcagcccgccgtg
gggcaggccgagccccccgcaccgccgcaggccgccgagcccgcggcggacgcggccaca
ccggccgaacctccggaaccaccgcgcgcggccgaggccgacgcgtccttcaccggtacg
ggcgtcatcttctccgcgccggacgtgccgagcgccacgcaaccgtccaccggcgcggcg
gcgcaccacacgcagctgttcacgcactcggtgcgacccgaggccgagccggtgaccccg
gcggtgttcgagtccgccgccgtcgtgcaggcgccgctgttcctgtcgccggacgccgcg
gccgccgagcaggcgcgcagacagcggcgcgccgagcgggaaacccggcacaccgagcag
caggcgcccgagcccgccgaggacgagaccgaggtcgaggacgagcgcgagtccgaccag
cagggcgaagccgacggccagccccggcgcaggcgccgtggccgccgcggccggggtcgt
ggcaggggtgagcagcagtccgaagccgacggcgacggcgaggacaacgacgacgagacc
gagaccgagaccgtggacgagtcggcccctgcggcttccgagcccgccgaggcggagtcc
gcggagaccggcgatggcgaggacgaggacggcgtgccggaaggctcgagccgccgccgc
cgtcgccgtcgtcgccgcaaggtggccggtgagtccggcgagaacgaggcctccgacgac
gatccgccgaacacggtcgtgcacgagcgcgagccgcgcaacaagacccgcagccgcgcc
gcgtccgacgaggtccagggcatcaccggctccacccggctggaggccaagcggcagcgc
aggcgggacggccgtgaggcgggccgccgccgtccgccgatcctgaccgagtcggagttc
ctggcccggcgcgaagcggtggaccgcgtgatggtcgtgcgcgagaagtccttcccggac
cacccgaccgcgacgcaggtggccgtgctcgaggacaacgtcctggtcgagcacttcgtg
accagcaccggttcggcgtccatggtgggcaacgtctacctgggcaaggtgcagaacgtg
ctgcccagcatggaagccgcgttcgtcgacatcggccgcggccgcaacggcgtgctctac
gccggtgaggtcaactgggaagccgccggtctcggcggcaaggagcgcaagatcgagcag
gcgctcaagcccggcgaccaggtgctggtccaggtgagcaaggacccggtcggccacaag
ggcgcgcggttgaccacgcagatcagcctggccggtcgtttcctggtgtacgtgcccggc
ggcacctccaccggcatcagccgcaagctgcccgacaccgagcgcaagcggctgaaggag
atcctgcgcgacatcgtgcccgccgacgccggtgtgatcatccgcaccgcctccgaaggc
gtcagcgagaccgagctggcccgcgacgtggagcggctgcaggccacgtggcgcacgatc
cagcagcagaccggcaaggacaacaacgcgcccaagacgctctacgaagagcccgacctg
ctggtcaaggtcatccgcgacctgttcaacgaggacttctccaagctggtcatcgaaggc
gaccgggcctggagcacggtcgagaagtacatcggcaccgtcgcgccggacctgctcgcc
cgggtcaaccggcacgagaacaacggcgtcgacgtgttcgagacctaccggatcgacgaa
cagctggccaaggcgctggatcgtaaggtgtggctgccgtcgggcggcaccctggtgatc
gaccgcaccgaggccatgacggtgatcgacgtgaacaccggcaagttcaccggttccggc
ggcagcaatctggaggagacggtcaccaggaacaacctggaggccgccgaggagatcgtg
cgccagatgcggctgcgcgacatcggcggcatgatcgtcgtcgacttcatcgacatggtg
ctcgagtccaaccgcgatctggtgctgcgccgcctgaccgaggcgctgggccgcgaccgt
acccgccatcaggtctccgaggtcacctcgctggggctggtccagatgacccgcaagaag
ctcggcaccggcctggtcgaggcgttctccaccacctgcgagcactgccacggccgcggc
atcctcgtgcacacctacccggtggagcccggttccggcgaagagaccgcggggcgcacc
cgcgagagcggttcgcgcaggcggcggggccgcgacaagggtgcggccgcgcccgcccag
ccggccaacggatccggtcccgcgcccgagcaccccgaggaagaggcggcggtcaagcgg
gcgcatccagtggcgctggcgatggcggcgcaccagtccgacgagcccgaacaagccgag
gacgccgtcgagccgcgggtcgcggtcgccgacgaatccgccgcggagcgggtggtcacg
gagaccgtcgaagccgcggtggcggtgcccgccgaggagcccgagaccgagcccgccgaa
gtggtggaggtcatcgaggaagtcgagaaggtcgagccggtaccggcggaggagccggtc
tccgtcgcggagtccgctccggccgccgagcccgagcctgtcgccgaacccgtctcggct
gccgagcccgttccggcatcggagaccggtgcggccgccaacggtgtcgccgcaccggcg
gcccgtccggctcgtcgccgaagggttgcccgttcggccgccgcaccggcggcggacagc
tcgggagcggtgttcgtgctgcccaccggtgatcaggcgcccgcccccgcgatcgactac
tcccagccggaagcggccgaattgccgcagcgcaaccggccgcgcaggcgggcggtcggc
cgcccggccggtgcgccggaagcgccgaactga
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