KEGG   Nocardia seriolae: NS506_00039
Entry
NS506_00039       CDS       T04599                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
nsr  Nocardia seriolae
Pathway
nsr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NS506_00039 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nsr03021]
    NS506_00039 (rpoC)
   03400 DNA repair and recombination proteins [BR:nsr03400]
    NS506_00039 (rpoC)
Enzymes [BR:nsr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NS506_00039 (rpoC)
Transcription machinery [BR:nsr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NS506_00039 (rpoC)
DNA repair and recombination proteins [BR:nsr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NS506_00039 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: APA94130
UniProt: A0A0B8NEG7
LinkDB
Position
complement(33077..37030)
AA seq 1317 aa
MLDVNFFDELRIGLASAEDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKTVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAKKQLIIDEVI
YRELQDRYGEYFTGAMGAEAIQKLMETFDIDAEAENLRETIRTGKGQKKLRALKRLKVVA
AFQTNGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYR
AATKDAPEFGVYSSPAEAQMAVDRAELTVRSLIKIRLTNQRPPKDVEAELFPNGWQRGDA
WITKTTLGRVLFNDLLPADYAFIDEPMPKKRQAAIINDLAERYPMIVVAQTVDKLKDSGF
YWATRSGVTVSMSDVLVPTEKAEIMARYDAQADQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPQPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIVVPI
AEKQADGSLIRDAHVETSTYARTLATDAVDAKGNVIVEKGHDLGDPALEALLDAGITEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGSDEVLYDKL
SKRQRLRVFKHEDGSERLLADGDHVEVGQQLLEGSADPHEVLRVMGPRQVQIHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLVERAEFESSNRRVVAEGGEP
ASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARQAAYAVPSYDDSYYSPDGFGTSTGAAVPLDDYGFSDYR
NT seq 3954 nt   +upstreamnt  +downstreamnt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggcctccgccgaagacatt
cgtaactggtctttcggcgaggtcaagaagccggagaccatcaactaccgcacgctgaag
ccggagaaggacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggtgtc
gaggtgacgcgcgccaaggtgcgtcgtgagcgcatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgtcccgtcgcgcctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacgtgatcacggccgtcgat
gacgagctgcgtcacaacgagctgtccacgctcgaggcggagatggaggtcgagaagaag
accgtcgccgaccagcgcgacgccgatctcgaggcccgcgcccagaagctggaagccgac
ctggccgagctggaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggccaagaagcagctgatcatcgacgaggtgatc
taccgcgagctgcaggaccgctacggcgagtacttcacgggcgccatgggtgccgaggcg
atccagaagctcatggagaccttcgacatcgacgccgaggccgagaacctgcgcgagacc
attcgtacgggcaagggccagaagaagcttcgcgcgctgaagcgtctgaaggtcgtcgcc
gcgttccagaccaacggcaactcgccgatgggcatggtcctcgacgccgtgccggtgatc
ccgccggagctgcgcccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgtttgaagcgactgatcgatctg
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccggtccgggtaaccgcccgctgaag
tcgctgagcgatctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggaaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagctgatggcgctcgagctgttcaagccgttcgtcatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctgggtatccaggccttcgagccgctgctggtcgagggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcctcgggtcgtccgctcgccatgccgcgtctggac
atggtgaccggtctgtactacctgacccgcctggaagagggcgcgaagggcgagtaccgg
gcggccaccaaggacgcgccggagttcggcgtctactcctcgcccgccgaggcgcagatg
gccgtcgaccgcgccgagctgaccgtgcgttcgctgatcaagatccggctgaccaaccag
cgtccgcccaaggacgtcgaggccgagctgttcccgaacggctggcagcgcggcgacgcg
tggatcaccaagaccacgctgggccgggtgctgttcaacgatctgctcccggcggactac
gcgttcatcgacgagccgatgccgaagaagcgtcaggccgcgatcatcaacgatctggcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggactcgggcttc
tactgggccacgcgttcgggcgtcacggtctccatgtcggacgtgctcgtgccgaccgag
aaggccgagatcatggcgcgttacgacgcgcaggccgatcagatcgagaagaagtaccag
cgtggtgcgctcgatcaccaggagcgcaacaacgccctggtcaagatctggcaggaagcg
accgaagaggtcggtaaggcgctgcgcgcgcactacccggccgacaacccgatcatcacg
atcgtcgactcgggcgccacgggtaacttcacccagactcgtaccctcgcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcagccgatcaagtcctccttccgt
gagggcctgacggttctggagtacttcatcaacacccacggtgcgcgaaagggtctggcc
gacaccgcgcttcgcaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtggcaccgagcgcggcatcgtggtgccgatc
gcggagaagcaggccgacggctcgctcatccgtgacgcccacgtggagaccagcacctac
gctcgtacgctggccaccgacgcggtcgacgccaagggcaacgtcattgtcgagaagggc
cacgacctgggcgatcccgccctggaggcgctgctcgacgccggcatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggtaccggcgtgtgcgccacctgctacggccgc
tcgatggcgaccggcaagctggtggacatcggcgaggccgtcggtatcgtcgccgcccag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcc
ggtgacgacatcacgggtggtctgccccgcgtgcaggagctcttcgaggctcgtgtgccc
aagggcaaggcccccatcgccgaggtgtcgggtcgcgtgcggctcgaggacgacgaccgc
ttctacaagatcacgatcatcccggacgacgggtcggacgaggtcctgtacgacaagctg
tcgaagcgtcagcgcctgcgggtgttcaagcacgaggacggttccgagcgtctgctcgcg
gacggcgaccacgtggaagtcggccagcagctgctcgagggctcggccgatccgcacgag
gtgctgcgcgtgatgggcccgcgtcaggtgcagatccacctggtccacgaggtccaggag
gtgtaccgctcgcagggtgtgtccatccacgacaagcacatcgaggtgatcgtccgccag
atgctgcgccgcgtcaccatcatcgattcgggtgcgaccgagttcctcccgggttcgctg
gtggagcgcgccgagttcgagtcctccaaccgccgcgtggtcgcggagggtggagagccc
gcctcgggtcgtccggtgctgatgggtatcaccaaggcgtcgctcgcgaccgattcgtgg
ctgtcggcggcctccttccaggagaccacccgcgtgctcacggatgccgcgatcaactgc
cgctccgacaagctgatcggcctgaaggagaacgtgatcatcggtaagctgatcccggcc
ggtaccggtatcaaccggtaccgcaacatccaggttcagcccaccgaagaggcgcgccag
gccgcgtacgctgtcccgtcctacgacgacagctactacagcccggacggcttcggcacc
tccaccggtgccgcggtgccgctggacgactacggcttcagcgactaccgctaa

DBGET integrated database retrieval system