Nocardia seriolae: NS506_06501
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Entry
NS506_06501 CDS
T04599
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nsr
Nocardia seriolae
Pathway
nsr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NS506_06501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsr03400
]
NS506_06501
Enzymes [BR:
nsr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NS506_06501
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NS506_06501
DNA repair and recombination proteins [BR:
nsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NS506_06501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
NFACT_N
Gln_amidase_like
Motif
Other DBs
NCBI-ProteinID:
APB00537
UniProt:
A0A0B8NHR5
LinkDB
All DBs
Position
complement(6823922..6824779)
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AA seq
285 aa
AA seq
DB search
MPELPEVEVVRRGLTEHVVGRVLDRVTVKHPRSVRRHELGGDDLAARLTGLRVENAQRRG
KFLWLTFDEPDTSLVVHLGMSGQMLVQPATALLEKHAHIIAALDDGNELRFVDQRTFGGW
MLSDLVEVDGTWVPESAAHIARDPLDSLFDADAVVKTLRGKQSEIKRLLLDQTVVSGVGN
IYADEALWRARIHGERPAAKLTKPALHSLLVETQHVMGEALQAGGTSFDALYVNVNGQSG
YFERSLNAYGREDEPCRRCGAIMRREKFMNRSSFSCPRCQPRPRG
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacttcccgaggtcgaagtcgtccggcgcgggctcaccgagcatgtggtgggc
cgcgtcctggaccgggtgaccgtcaagcatccgcgctcggtgcgccgccacgaactcggc
ggagacgatctcgccgctcgattgaccggtctgcgcgtcgagaacgcgcagcggcggggc
aaattcctgtggctcaccttcgatgagcccgatacctctctcgtcgtgcatctcggcatg
tccgggcagatgctggtgcagcccgcgaccgcgctgctggagaagcacgcgcacatcatc
gccgccctcgacgacgggaacgaactgcggttcgtggaccagcgcaccttcggcggctgg
atgctctcggatctggtcgaggtggacggcacctgggtgcccgagtccgcggcgcacatc
gcgcgcgacccgctggattcgctcttcgacgccgatgccgtcgtgaagacattgcgcggc
aagcagtccgagatcaaacggctactgctggatcagaccgtggtgtccggggtcggcaat
atctacgccgatgaggcgctgtggcgggccaggatccacggtgagcgccctgccgccaag
ctgaccaagcccgcgctgcactctctgctcgtcgagacgcagcacgtgatgggtgaggca
ctccaggccggaggcacctccttcgatgccctctacgtcaacgtgaacgggcaatccggg
tacttcgaacgctcgctcaacgcctacgggcgcgaggacgagccctgccgccgctgcggc
gcgatcatgcgccgggagaagttcatgaaccgttcgtctttctcctgcccgcgctgccag
ccccgcccgcgcggctga
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