Nocardia seriolae: NS506_06845
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Entry
NS506_06845 CDS
T04599
Symbol
rtcB
Name
(GenBank) RNA ligase (ATP)
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nsr
Nocardia seriolae
Brite
KEGG Orthology (KO) [BR:
nsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nsr03016
]
NS506_06845 (rtcB)
Enzymes [BR:
nsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NS506_06845 (rtcB)
Transfer RNA biogenesis [BR:
nsr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NS506_06845 (rtcB)
Prokaryotic type
tRNA splicing ligases
NS506_06845 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APB00876
UniProt:
A0A0B8N1H6
LinkDB
All DBs
Position
7165715..7166938
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AA seq
407 aa
AA seq
DB search
MFPVELRGTRAQTLMWAHEHEVEPAALAQLRNIAQLEWVYGVRVMPDVHLGKGATVGSVI
AMKDAVAPAAVGVDIGCGMEAVLTSLTAADLPDNLHSLRSRIEAALPVGFRAHDDPVNVN
RLNAEVFGQHAAGTTMRAGWERFWKAFDALDPAVHSRESKAHKQMGTLGSGNHFQELCID
TEQRVWILLHSGSRNIGKELAERHMAVARTLPHNVDLPDRDLAVFLSGTPEMDAYRRDLT
WAQEYAARNRAVMLALVCKAVRDEFDGLTVRFDEPISCHHNYVAEEIIDGMPMLVTRKGA
VRAGAGDLALIPGSMGTRSYVVRGKGNPASFQSASHGAGRRMSRNAAKRQFTVADLVAQT
EGVESRKDAGVIDEIPAAYKDIDQVIAAQSDLVDIVATLRQVLCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccgtcgagctgcgcggcactcgggcgcagacgctcatgtgggcccacgagcac
gaggtcgaaccggccgcgttggcacagctgcgcaatatcgcgcaactggagtgggtgtac
ggcgtgcgagtcatgccggacgtgcacctgggcaagggggcgacggtcggatcggtcatc
gccatgaaggacgcggtcgcacccgcggcggtcggggtggatatcgggtgcgggatggag
gcggtgctgacgtcgctgaccgcggcggatctgcccgataatctgcactcgctgcggtca
cgtatcgaggcggccctaccggtcggattccgggcgcatgacgacccggtcaacgtgaat
cgattgaacgcagaggttttcggccagcacgcggcaggcaccaccatgcgtgctggatgg
gagcgcttctggaaggcgttcgatgctctggatcctgcggtccattcccgcgagtccaag
gcgcacaagcagatgggaacgctcggatcgggcaaccacttccaggaactctgcatcgat
accgagcagcgcgtctggatcctgctgcactccggaagccgcaatatcggcaaggaactc
gccgagcggcacatggccgtggctcgcaccctgccgcacaatgtcgacctgccggaccgt
gatctggcggtattcctttccggcacaccggaaatggatgcctaccggcgtgacctgacc
tgggcgcaggagtacgcggcgcgcaaccgtgccgtcatgctggcactcgtctgcaaggcg
gtgcgcgacgaattcgacgggctgacagtgcgtttcgacgagccgatctcctgccaccac
aactatgtggcggaggagatcatcgacgggatgcccatgctggtcacccgcaagggtgcg
gtgcgggcgggagcgggggatctcgcgctgattcccgggtcgatgggtacgcggtcgtat
gtggttcggggtaaggggaatccggcctcgttccagtcggcgtcgcacggggcggggcgg
cggatgagccggaatgcggccaagcggcagttcacggtggcggatctggtggcgcagacc
gagggggtggagtcccggaaggacgccggggtgatcgatgagatcccggcggcgtacaag
gacatcgatcaggtcatcgcggcgcagtccgacctggtcgatattgtcgccacgctgcgg
caggtgctgtgcgtcaaggggtga
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