Nocardia seriolae: NS506_06860
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Entry
NS506_06860 CDS
T04599
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nsr
Nocardia seriolae
Pathway
nsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NS506_06860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsr03019
]
NS506_06860
03009 Ribosome biogenesis [BR:
nsr03009
]
NS506_06860
Enzymes [BR:
nsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NS506_06860
Messenger RNA biogenesis [BR:
nsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NS506_06860
Ribosome biogenesis [BR:
nsr03009
]
Prokaryotic type
rRNA processing factors
NS506_06860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
APB00891
LinkDB
All DBs
Position
complement(7178849..7182067)
Genome browser
AA seq
1072 aa
AA seq
DB search
MADQEPLEASQSNGEGEGASTTPAAEQLPERIRVHALAKLLGTTSKRILAHLTEMGAQAR
SPQSSLDRAVAETVRDAFGPRDIDAPDPIAVPEPAEEPVAPGPIAESTVDAAIAAQDDRA
ADEIAAEEVEAAEAAVAAPARQTSLFASPFQSEPQVDEPVQYQPSAAVAAPLFQAPDAAA
AEEARRARRAERKARTEERVAAEKDVETKAVTAKAVAEEPVAEDAEDEGEWDGEQRGRDE
ADREGTSRRRRRGRRGRGRGRGEQHGDNDTGDLDGDEAEADETAEAADIDAAEDEDEGAA
VPEGSSSRRRRRRRRRKGGEDNEPEASDDDPPNTVVHEREPRSKRRAAAKDVDEVQGISG
STRLEAKRQRRRDGREAGRRRPPILTESEFLARREAVDRVMVVREKHFAEHPTSTTQVAV
LEDNILVEHFVTSTGSASMVGNVYLGKVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAA
GLGGKERKIEQALKPGDTVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRK
LPDTERKRLKEILRDIVPQDAGVIIRTASEGVSEPELARDVERLQATWRTIEEQSKQGSG
APKTLYEEPDLLVKVVRDLFNEDFSKLVIEGERAWTTVENYVRTVAPDMLARVERYEGSG
VDVFGSLRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGSNLEETVT
RNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVT
SLGLVQMTRKKLGTGLVEAFSTTCETCHGRGILVHNYPVEASAPAGDTGEGVGRREGSRR
RRKDRNAPAAEAPAVEPVVEEKVEKTDKPEVKAEQAAAKRAHPVAMAMAAHAAEEAVHAA
DEDAVTAADAANAVPAEGDSVADVAAAESVIVRAAENAAAEATLAERAVTEVEDEVAAST
NGTAVAPVVDTVVVESEPAAIESPIAEAHAAEAAVAAAEARSGRRPTRRRVARTASAPAA
DSKGAVFVLSSTDQADKPGFNLDDLAPAVVPPRARPRRRAAGRAAGAPEGEN
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagagccgctggaagcatcgcagagcaatggcgaaggggagggcgcttcg
accaccccggctgccgaacagttgccggaacggatccgagtgcacgcactggcgaagctg
ctgggcaccaccagcaaacgtattctggcccacctgaccgagatgggcgcgcaggcgaga
agcccgcaatccagcctggaccgcgccgtcgccgagaccgtccgcgacgccttcggcccc
cgtgatatcgatgcgcccgatcccatcgcggttcccgaacccgccgaggagccggtcgct
cccgggcccatcgccgagtccaccgtcgacgcggccatcgccgcgcaggacgatcgggcc
gccgacgagatcgccgccgaggaagtggaagccgcggaggcggccgtcgccgccccggcc
aggcagaccagcctgttcgcgagcccgttccagagcgagccgcaggtcgacgagccggtc
cagtaccagccgtccgccgcggtggccgcgccgctgttccaggcgccggacgccgcggcc
gccgaggaggcccgccgcgcgcgccgcgccgagcgcaaggcccgcaccgaagaacgggtc
gccgccgaaaaggatgtcgagaccaaggccgtcactgccaaggccgtcgccgaggagccc
gtcgccgaggacgccgaggacgagggcgaatgggacggcgagcagcgcggccgtgacgag
gccgaccgcgagggcacctcgcgccgtcgtcgtcgtggtcgccgcggtcgcggccggggt
cgcggagaacagcacggcgacaatgacaccggcgatctcgacggtgacgaggccgaggcc
gacgagaccgccgaagccgccgatatcgacgccgccgaggatgaggacgagggcgcggcc
gtgcccgagggctcgagcagccgtcgccgtcgccgtcgtcgccgccgcaagggcggggag
gacaacgagcccgaggcctcggacgacgatccgcccaacaccgtcgtgcatgagcgggag
ccgcgcagcaagcgccgtgccgccgccaaggatgtcgacgaggtgcagggcatcagcggt
tcgacccgcctggaggccaagcgtcagcgccgccgcgacggtcgcgaggccgggcgccgc
cgcccgcccatcctgaccgagtcggagttcctggcccgccgcgaagcggtggaccgggtg
atggtggtgcgcgagaagcacttcgcggagcaccccacctccaccacccaggtcgcggtg
ctcgaggacaacatcctggtcgagcacttcgtgacctccacgggttcggcgtccatggtc
ggcaatgtgtacctgggcaaggtgcagaacgtgctgccgtcgatggaggcggcgttcgtg
gacatcggccgcggccgcaacggcgtgctgtacgcgggcgaggtgaactgggaggccgcc
ggtctgggcggcaaggagcgcaagatcgagcaggcgctcaagcccggtgacaccgtgctg
gtgcaggtctccaaggatccggtgggccacaagggcgcccgcctgaccacgcagatcagc
ctggccggtcgcttcctggtgtacgtgccgggcggcacctccaccggcatctcccgcaag
ctgcccgacaccgagcgcaagcggctcaaggagatcctgcgcgacatcgtgccgcaggac
gccggtgtgatcatccgcaccgcgtcggagggcgtctccgagcccgagctggcgcgcgat
gtcgaacggctgcaagcgacttggcgcaccatcgaggagcagtccaagcagggctcgggc
gcgcccaagaccctgtacgaagagccggacctgctggtcaaggtggtccgcgacctgttc
aacgaggacttctccaagctggtcatcgagggcgagcgcgcctggaccacggtcgagaac
tacgtccgcacggtcgccccggacatgctggcccgggtcgagcgctacgagggcagcggt
gtcgacgtgttcggctcgctgcgcatcgacgagcagctggccaaggccctcgaccgcaag
gtgtggctgccctcgggcggcaccctggtgatcgaccgcaccgaggccatgaccgtcatc
gacgtcaacaccggcaagttcaccgggtcgggcgggtccaatctcgaagagaccgtgacc
cgcaacaacctggaggcggccgaggagatcgtgcgccagatgcggctgcgcgatatcggc
ggcatgatcgtggtcgacttcatcgacatggtcctggagtccaaccgggacctggtgctg
cgccgcctcaccgaggcgctgggccgcgaccgcacccgccaccaggtctccgaggtcacc
tcgctgggcctggtccagatgacccgcaagaagctgggcaccggcctggtcgaggcgttc
tccaccacctgtgagacctgccacggccgtggcattctggtgcacaactatcccgtcgaa
gcgtcggctccggccggtgacactggcgagggcgtgggtcgccgcgaggggtcgcgccgc
cgccgcaaggaccgcaacgcgcccgccgccgaggccccggccgtcgagccggtggtcgag
gagaaggtcgagaagacggacaagcctgaggtcaaggccgagcaggccgcagccaagcgg
gcccacccggtcgccatggccatggccgcgcacgccgccgaagaggccgtgcacgccgcg
gacgaggacgccgtcacggccgccgacgccgcgaatgcggtaccggccgagggtgattcc
gtggccgatgtcgcggctgccgagtcggtcatcgtgcgcgcggccgagaacgccgccgcc
gaggccacactcgccgagcgcgcggtgaccgaggtcgaggacgaggtggcggcgagcacc
aacggcaccgcggtcgcaccggtcgtggacaccgtggtggtcgagtccgagcccgcggca
atcgaatcgccgatcgccgaggcgcacgcggccgaggccgccgtggccgccgccgaggcg
cgctccggccgccgccccacccgtcgccgggtggcccgcacggcctcggccccggccgcc
gacagcaagggcgcggtgttcgtgctgtccagcaccgaccaggcggacaagccgggcttc
aacctcgacgacctggccccggccgtggtcccgccgcgggcccgcccgcgccgccgggcc
gcgggtcgcgccgccggtgcgccggagggtgagaactag
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