KEGG   Nocardia seriolae: NS506_07313
Entry
NS506_07313       CDS       T04599                                 
Name
(GenBank) putative ATP-dependent helicase lhr
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
nsr  Nocardia seriolae
Brite
KEGG Orthology (KO) [BR:nsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nsr03400]
    NS506_07313
Enzymes [BR:nsr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NS506_07313
    5.6.2.6  RNA 3'-5' helicase
     NS506_07313
DNA repair and recombination proteins [BR:nsr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    NS506_07313
SSDB
Motif
Pfam: DEAD_assoc WH3_Lhr WH2_Lhr WH_Lhr WH4_Lhr DEAD Helicase_C ResIII AAA_25 DUF6406 PhoH
Other DBs
NCBI-ProteinID: APB01333
UniProt: A0AAW9VJA4
LinkDB
Position
7643999..7648696
AA seq 1565 aa
MDRFSPATRAWFDGAFPAPTAAQLGAWESIAAGQHTLVIAPTGSGKTLSAFLWAIDRLAT
REPGTVPNKTEAGPRKTSVLYISPLKALAVDVERNLRAPLVGITQTAKRLGVDAPEIRVG
VRSGDTSAADRRSMQRTPPDILITTPESLFLMLTSAARETLSGVHTVIVDEVHAIAGSKR
GAHLALSLARLDLLRSASPHFERPAQRIGLSATVRPAPEVGRFLVGSAPISIVSPPAPKT
FDLSVRVPVADMTEPDAGAEDSDQPGSIWPHVDEAIVDLVLEHRSSIVFANSRRLSERLT
ARLNEAYAARIGEAVDTEHAPPAQLGAATEVIHGATTLLARAHHGSVSKEQRALIEDDLK
SGRLRCVVATSSLELGIDMGAVELVVQVEAPPSVASGLQRVGRAGHQVGEISRGVIFPKH
RTDVIHCAVASQRMTAGQIEELQVPAHPLDILAQQTVAACALEPIDADAWFDTVRGTGSY
AALPRSAYESVLDLLAGRYPSDEFAELRPRIVWDRDAGTLTGRPGAQRLAVTSGGAIPDR
GLFPVFMVGEKASRVGELDEEMVYESRVGDAFALGATSWRIEEITFDRVLVTPAFGLPGR
LPFWHGDSLGRPAELGAALGEFVRHAGQELEKKKRSPGSEVETVSLQGGLDENATANLVA
LLAEQREATGQLPTDKTLLVERFRDELGDWRVVLHSPYGLPVHAPWALAVGARLRERFGV
DAAPTPSDDGIVVRLPDTTDDPPGAELFVFETDEIDDLVTEQVGGSALFASRFRECAARA
LLLPRRDPGKRAPLWQQRQRAAQLLDVARKFPEFPILLETVRECLQDVYDLPSLRELLGR
VARRQVRLVEVETAAPSPFANSLLFDYIGQFMYEGDSPLAERRAAALSLDSSLLAELLGR
VELRELLDPAVLEQTERELQRVTPERQARDMEGLADLLRLLGPVTAEEAGERCVADPREW
FAELVKAHRALEVSFAGSRWWVAIEDASRLRDALGVPLPIGVPAAFIEPVADPLGDLIGR
YARTHGPFTLTGVAHRFGLGPAVAATALHRLAIEKRVVEGEFTPGSAGTEWCDSEVLRRL
RRRSLAAARKEVEPVATAALGRFLPSWQHVGTGELRGVDGVAAVVEQLAGVPIPASAWES
LILPLRVRDYSPAMLDELMATGEVIWSGHGSITAKDGWIALHPAEQAGLTLPPPDDIDLT
ERHIGLLTALGATVIGGTVDKGESSAGGDPLATTLPKGEYQVVAGSTGGAYFFRQLTDSV
GSGDGADPGDETAVAAALWDLVWAGHVGGDTFAPVRALLAGTTRSTTAHHTPRRAPRGRM
YLPRTGMPARTSSPQVAGRWSLLPERIADNTIRAHATADVLLERYGVLTRGSVQSEGVPG
GFALMYRVLTEFEDRGRCRRGYFVDSLGGAQFSTTDVVDRLRSFDTDRSRTADSFGTEPV
GNAAALAACDPANPYGAALPWPKAAAEGAGHRPGRKAGALVVLVEGELALYLERGGKTLL
TFTEDPAVRTAAATALAQLVHDRRVDSLVIDRVNGESVHGNTFASFLTEAGFAATPKGFR
LRGRP
NT seq 4698 nt   +upstreamnt  +downstreamnt
atggatcggttctcgcctgcgaccagagcgtggttcgacggtgcgtttcccgcgccgacg
gccgcgcaactgggggcgtgggaatcgatcgcggcggggcagcacacgctggtgatcgcg
cccacggggtcgggtaagacgctctccgcatttctttgggccatcgatcggctggccacc
cgggagccggggactgtgccgaacaagacagaggcaggcccgcgcaagacctcggtgctc
tatatctcgccgctcaaggcgctggcggtggacgtcgagcggaatctgcgggcgccgctg
gtggggatcacgcagacggccaagcggctgggggtggacgcgcccgagattcgggtgggg
gtgcggtccggggataccagcgcggcggatcggcggagcatgcagcgcacgccgccggac
attctgatcaccacgccggagtcgctgttcctgatgctgacctcggcggcgcgggagacg
ctgagcggggtgcacaccgtcatcgtggacgaggtgcacgccatcgcggggtccaaacgc
ggtgcgcacctggcgctttcgctggcccgcttggatctgctccgctccgcctccccgcac
ttcgagcggcccgcccagcggatcgggctgtcggcgacggtgcggccggcgccggaggtg
gggcgattcctggtcgggagcgcgccgatcagcatcgtgtcgccgcccgcgcccaagacc
ttcgatctgtcggtgcgggtgccggtggcggacatgaccgaacccgatgcgggcgcggag
gattcggatcagccggggtcgatctggccgcacgtggacgaggcgatcgtggatctggtg
ctcgagcaccggtcgtcgatcgtgttcgcgaattcgcggcggctctcggagcggctcacc
gcgcgattgaacgaggcgtacgcggcgcgcatcggggaggcggtggacaccgagcacgcg
ccgcccgcacagctgggggcggccaccgaggtgatccacggtgccacaacgcttctggcg
cgcgcccaccacggctcggtgagcaaggaacagcgggcgctcatcgaggacgatctcaag
agcgggcggctgcgctgcgtcgtcgccaccagcagcctcgaactcggcatcgatatgggc
gcggtggaattggtggtgcaggtggaggccccgccgtcggtcgcctccggactgcaacgg
gtgggccgcgccggacaccaggtcggcgagatctcgcgcggcgtcatcttccccaagcac
cgcaccgatgtcatccactgcgcggtggcgtcccagcgcatgacggccgggcagatcgag
gaactccaggtgcccgcgcatccgctcgacatcctcgcccagcagaccgtggcggcctgc
gcgctggagccgatcgacgccgacgcctggttcgacaccgtacgcggcacgggaagctat
gcggcactcccccgttcggcctacgagtccgtacttgacctgctcgcgggccgctatccc
tccgacgaattcgccgaactgcggccgcgcatcgtctgggatcgcgacgcgggcaccctc
accgggcggcccggtgcgcaacgcctggcggtgacctccggtggcgcgattcccgatcgt
ggactcttcccggtcttcatggtcggcgaaaaggcttcccgggtaggtgaactcgacgag
gagatggtctacgagtcgcgggtgggcgatgccttcgccctgggcgcgaccagctggcgg
atcgaggagatcaccttcgaccgggtgctggtgacgccggcgttcgggctcccgggccga
ctccccttctggcacggcgactccctcggccgccccgccgaattgggtgcggcgcttggc
gaattcgtgcggcacgccggtcaagagctcgagaagaagaagcggtcgccgggatccgag
gtcgaaaccgtctcgctgcaaggcggattggacgagaacgcgaccgcgaatctggtggcg
ctgctcgccgagcagcgggaggcgaccgggcagttgccgacggacaagacgctgctggtc
gagcggttccgggatgagctgggtgactggcgggtggttctgcattcgccctacgggttg
ccggtgcatgcgccgtgggcgttggcggtgggggctcggctgcgcgagcggttcggggtg
gacgccgcgcccacgccgtcggatgacgggatcgtggtgcggttgcccgacaccaccgat
gatccaccgggggcggagttgttcgtgttcgagaccgacgagatcgatgatctggtgacc
gaacaggtcggggggtcggcgcttttcgcctcgcggttccgggagtgcgcggcgcgggcg
ctgctgctgccgcggcgggatccgggaaagcgggcgccgctgtggcagcagcggcagcgg
gcggcgcagctgctggacgtggcgcgcaagttcccggagttcccgattctgctggagacc
gtgcgcgaatgtctccaggacgtgtacgacctgccgtcgctgcgggagctgctgggccgg
gtggcgcggcggcaggtgcggctggtcgaagtggagaccgccgcgccgtcgccgttcgcg
aattcgctgctgttcgactacatcgggcagttcatgtacgagggcgattcgccgctggcc
gagcggcgggcggcggcgctgtcgctggactccagcctgctggctgagttgctcggacgg
gtggaactgcgcgagctgctggatccggcggtgctggagcagaccgagcgggaattgcag
cgggtcacacccgagcggcaggcgcgggatatggaggggctggccgatctactgcgactg
ctcgggcctgtcaccgcagaagaggccggtgagcggtgtgtggccgatccgcgggagtgg
ttcgcggagctggtgaaagcgcatcgggcgctggaggtttccttcgccggttcgcggtgg
tgggtggccatcgaggatgcctcgcggctgcgcgacgcgctcggggtgccgctgcccatc
ggggttccggccgcgttcatcgaacccgtcgccgatccgctgggggatctgatcggccgg
tacgcgcgcacccacggacccttcacactgaccggggtcgcgcatcggttcgggctggga
ccggccgtggcggccacggcactgcatcggctcgccatcgagaaacgcgtcgtggaaggc
gaattcacgcccggctcggccggaaccgaatggtgcgacagcgaggtgctgcgccgcctg
cgccgccgctcgctggccgccgcccgcaaggaagtcgagcccgtggcgaccgccgccctg
ggccgtttcctcccgtcctggcagcacgtcggcaccggcgagctgcgcggcgtggacggt
gtcgcggcggtggtggaacagcttgcgggcgtgccgattccggcctccgcttgggagtcc
ctgatcctgccgctgcgggtacgcgactactcccccgccatgctggacgaactcatggcc
accggcgaggtcatctggtccgggcacggatccatcaccgccaaggacggctggatcgcc
ctgcacccggccgaacaggcgggcctgaccctgccgccgcccgacgacatcgacctcacc
gaacgccacatcggactgctgacggccctgggtgccaccgtcatcggcggcaccgtcgac
aagggtgagagcagtgcgggcggggacccgctcgccacgacgctgccgaagggcgaatac
caggtggtggcgggcagcaccgggggcgcgtacttcttccggcagctgacggacagcgtc
ggctcgggagacggtgccgaccctggggatgagaccgcggtggcggcggcgctgtgggat
ctggtgtgggccgggcatgtcggcggcgacaccttcgcgccggtgcgcgctctattggcc
gggacgacccgcagcaccaccgcgcatcacacgcctcggcgggcgccgcgggggcgaatg
tatctgccgcgcaccggaatgcccgcgcgcacgagctcgccgcaggtggcgggtcgctgg
tcgctgctgccggagcggatcgccgacaatacgattcgcgcccatgccaccgccgatgtg
ctgttggagcggtacggcgtgctgacgcgggggtcggtgcagagtgagggtgtgcccggg
ggcttcgccctcatgtatcgggtgctcaccgagttcgaggatcgtgggcgttgccgtcgc
ggatatttcgtggattcgctcggtggcgcgcagttctcgaccacggacgtggtggatcgg
ctgcgctcgttcgacaccgatcggtcccgcaccgccgactcgttcgggaccgagccggtc
ggcaatgcggcggcgctggcagcgtgcgatccggcgaatccctatggcgcggcactcccc
tggcccaaggccgccgccgagggtgcgggccaccggccggggcgcaaggcgggtgccctg
gtcgtcctggtcgagggagagctggcgctgtacctcgaacgtggcggcaagacccttctc
accttcaccgaggatccggccgtgcggaccgcggcggccaccgccctggcgcagctggtg
cacgatcgccgggtggactccctcgtcatcgaccgggtgaacggagaatccgtgcacggc
aacaccttcgcgagcttcctcaccgaggcgggcttcgccgccacaccgaagggcttccgc
ctccgaggccgcccatga

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