Notechis scutatus (mainland tiger snake): 113410399
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Entry
113410399 CDS
T09026
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113410399 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113410399 (CSTF1)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113410399 (CSTF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
VPS8_N
PROPPIN
Beta-prop_WDR11_1st
Beta-prop_WDR75_2nd
Beta-prop_HPS5
Frtz
Beta-prop_SPT8
DUF7099
Motif
Other DBs
NCBI-GeneID:
113410399
NCBI-ProteinID:
XP_026520735
UniProt:
A0A6J1TRX9
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MCGVSMQQPVRRSGPRARLLLPPPQPPPPLQPPPPPAPLHLPAQSPLEAVGPPAAVLSGD
RSRTKDGLTPGRQPLFTMYRPKVSLKDRQQLYRLIISQLLYDGYINIANGLINEVKPQSV
CAPSEQLLHLIKLGMENDDSAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCY
VTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENH
PVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSI
SFHPSGDFILVGTQHPTLRLYDVNTFQCFVSCNPQDQHTDAICSVNYNASANMYVTGSKD
GCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVK
YTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNSIVRCI
VHSPTNPGFMTCSDDYRARFWYRRSTTD
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggggtttcgatgcagcagcctgttcgacggagcggtcctcgggccagactgctg
ctaccgccgccgcaaccgccgccccccctgcagccgccgccgccgcccgctccgcttcac
ctgcccgcccagtcgccccttgaagccgtggggcccccggcagccgttctgagcggagat
cgatcgcggacgaaggacgggctcacacctggaaggcaacccttgttcacaatgtataga
ccaaaagtaagccttaaagaccggcaacaactttacaggcttattattagtcagctgtta
tatgatggatatatcaatattgctaatggtctgataaatgaagtaaagccacagtctgtc
tgtgcaccctccgaacaactgttgcatcttattaaactaggaatggaaaatgacgatagt
gcagttcagtatgcaattggacgctctgatacagtagctcctggaacaggaattgacttg
gagtttgatgcagatgtacagactatgtccccagaagcatctgaatatgagacatgttat
gtcacatctcacaaaggaccatgtcgtgtagctacgtacagcagagatggacagttaatt
gctacaggatccgctgatgcatcgataaaaatacttgataccgaaagaatgttagcaaaa
agtgctatgcccattgaggttatgatgaatgaaacagctcagcagaacatggagaaccat
ccagttattaggactctttacgatcatgtagatgaggtcacctgtttagcttttcatcca
actgaacaaatccttgcatctggatcaagagactacactcttaaattgtttgactactca
aaaccatctgccaagagagctttcaaatatattcaggaagcagaaatgctgcgctctata
tctttccatccttctggggatttcatacttgttgggacacagcatcctaccctgcggctc
tatgatgtaaatactttccagtgctttgtatcctgcaatcctcaagatcaacatacagat
gctatatgctctgttaattacaatgcaagtgctaacatgtatgtaacaggcagcaaagat
ggatgcatcaaattgtgggatggagtttcaaatcgttgtatcaccacttttgagaaggca
catgatggtgctgaagtttgttctgccattttctctaagaactccaagtacatactttca
agtggaaaggattctgtggctaaactgtgggagatatcaacaggaaggacactagtcaaa
tatacaggagctggcctgagtggacgccaggttcataggacacaggctgtttttaatcac
accgaagactatgtgctccttcccgatgaaaggaccattagcctttgctgctgggattca
cgaacggcggagcgaagaaatcttctttccttggggcataatagcattgttcgctgcatt
gtccattcacctacaaatcctggattcatgacttgcagtgatgactatagagctcgattt
tggtaccgaagatcaaccacagattaa
DBGET
integrated database retrieval system
