Notechis scutatus (mainland tiger snake): 113410521
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Entry
113410521 CDS
T09026
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04510
Focal adhesion
nss04512
ECM-receptor interaction
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113410521 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113410521 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113410521 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nss00535
]
113410521 (COL9A1)
Proteoglycans [BR:
nss00535
]
Extracellular matrix (ECM) proteoglycans
Others
113410521 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
113410521
NCBI-ProteinID:
XP_026520895
UniProt:
A0A6J1TSF0
LinkDB
All DBs
Position
Unknown
AA seq
847 aa
AA seq
DB search
MDRDNCSMSNLVAGFPITFNSNMRMDLCPRTKIGQDDLPGYDLISQFQLDKAASTGIIQR
VVGSTSLQVAYKLGTKADFRIPTRSLYPQGLPDLYSILTTFRMTGNTIRKSWSLWQVLDS
SGKEQVGLKINGQAKSLDFSYKAIDGSLQTASFLDLPYLFDSQWHKVMVGIEKKSVTLYI
DCAKIQTLAVKPRGKINIDGFTTLGKLKNNPQISVPFEIQWLMIHCDPRRPQRETCSELT
IRSSISQTIVKGLTGPDGSPGLAGSKGQKGEVGLPGGRGLPGKGNPGPPGPPGIGGLPGE
VGRVGPPGDPGRRGPSGVPGPPGPRGTVGHHGGDPLCPNACTAGHPGFAGMMGMKGHKGA
KGESGEPGKQGFKGEEGEQGRIGDIGEQGPPGPQGLRGSIGIMGSKGDKGVRGFDGEPGP
QGLPGAAGDQGPRGSLGEAGPKGERGPQGIRGITGLPGPKGETGLPGVDGHEGIPAMPGA
KGEPGKPGPPGDTGIQGIPGLSGSAGARGVAGPKGDVGPPGKPGLMGNSGKPGEPGLQGE
PGSLGPKGPSGSRGEPGPSGPPGSPGKMGAEGDIGLPGLPGPPGLPGAKGNRGLAGGRGP
KGEQGPAGGEGEAGQRGDLGDAGLPGPKGSVGNLGEPGSRGPEGNRGMPGIEGFRGPPGP
RGLQGEQGTQGLPGSQGPAGREPTDLHIKQVCMRVIQEQLAQMAASLRRPEFGAPGIPGL
PGPPGSPGLPGHSGFPGQAGSRGLPGLKGPPGDIGPKGPKGDTGEKGERGFPGQGPKGLP
GTTGLPGEPGKPSYGTDGRDGERGPPGAAGSPGVPGPPGPPGPPGYCEQSACTMEAGLQG
GQNVKGP
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggacagagataactgcagtatgtctaatcttgttgcagggtttccaataacattcaat
tccaacatgagaatggacctctgtccacgaaccaagattggccaggatgatctaccaggt
tatgacttaatttcgcagttccagcttgataaagctgcttccacaggcattatccaacgt
gtggtgggctccacatctttacaagttgcttacaaattaggtaccaaagcagacttcagg
attcctactagatccttgtatcctcaaggactacctgatctgtactccattctgactact
tttcggatgactgggaataccattcggaaatcctggagcctatggcaagttttagattct
tctggaaaggagcaagttggactgaagattaacggccaagccaaaagccttgatttttca
tataaagcaattgatggaagtctccagacagcatcatttttggatttaccttatcttttt
gattcccagtggcataaagttatggtcggtatagaaaagaaatctgtcacactttatatt
gactgtgctaagatacaaactttagccgtaaaaccaagggggaagatcaatattgacggc
tttaccacattgggaaaattgaaaaataatccgcaaatttcagttccgtttgagatccag
tggctgatgattcattgtgatcctcgacgccctcaaagagagacatgcagtgaacttaca
atccggagctcgataagccagacaattgtaaagggattgacaggacctgatggatcacca
ggtttagccggttcaaaaggacaaaagggtgaagtgggcttgcctggaggccgtggactt
cctggaaaaggaaatcctggacctcctggtcctcctggtataggaggacttccaggagaa
gtgggaagagttgggccacctggtgatcctggaaggagaggcccctcaggagtgccggga
cctccagggccaaggggaacagttggccaccatggtggagatccactgtgtccaaatgct
tgcacagctggccatccaggatttgctggaatgatgggtatgaagggtcacaaaggagca
aaaggtgagagtggggaaccaggaaagcaaggctttaagggagaagaaggtgaacaagga
cgaattggtgacatcggagaacagggccctccaggacctcaagggttaagaggttccatt
ggcattatgggttctaaaggagataaaggtgttcgtggttttgatggagagcctggaccc
caaggtcttcctggggcagctggtgatcagggaccacgaggttcactgggagaagcaggc
cccaaaggagagaggggtccacaaggcattagaggaattactggacttcctgggccaaaa
ggagaaactggtttacctggagttgatggccatgaaggtatacctgccatgccaggagca
aagggtgaaccgggaaaaccaggacctccaggtgatacaggcattcagggaatccctggc
ttatctggctctgctggagcacgaggtgttgctggcccaaagggtgatgttggtcctcct
gggaaacctggcttgatggggaattcgggcaaacctggagaaccaggattacaaggagag
ccaggatcactgggacccaaaggcccatcaggtagcagaggtgagccaggcccttctggt
cctccagggtcaccaggtaaaatgggggcagaaggagacatcggactgccaggtttacct
gggcccccgggactgcctggtgctaaaggcaataggggtttagctggtgggcgagggcca
aaaggagaacaaggtcccgctgggggagaaggagaagctggacaaagaggcgaccttggt
gatgcaggtttgccaggccctaaaggatctgttgggaatcttggtgaacctggttcacgc
gggccagagggaaaccgtggcatgcctggcatcgaaggatttcgtggcccccctggcccc
cgtggtttgcaaggggaacaagggactcaggggttacctggcagtcagggaccagcgggt
agagaaccgactgatttgcatattaagcaggtttgcatgagagtaatacaagaacaattg
gcacagatggctgctagtcttcggaggcctgaatttggggctcctggcatcccaggccta
cctggtccacccggctcccctggacttccaggacacagtggcttcccaggacaggctgga
tcccggggactgcctggtcttaaaggcccccctggggacattggaccgaaaggccccaaa
ggtgacacaggtgagaagggggagagaggatttccaggtcaagggcctaaaggcttgcca
ggaacaacaggactccctggagaacccggcaagcccagttatggcactgatgggcgagat
ggcgagagaggcccacctggagccgctggttctcctggtgttccaggtcctcctggccct
ccaggtcctcctggttattgtgaacagtcggcctgcaccatggaagctggattacaagga
gggcagaatgtgaaaggcccatga
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