Notechis scutatus (mainland tiger snake): 113411547
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Entry
113411547 CDS
T09026
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113411547 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nss03041
]
113411547 (CDC40)
Spliceosome [BR:
nss03041
]
Complex C
Other components
Step II factors
113411547 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
113411547
NCBI-ProteinID:
XP_026522450
Ensembl:
ENSNSUG00000018355
UniProt:
A0A6J1TWK1
LinkDB
All DBs
Position
Unknown
AA seq
587 aa
AA seq
DB search
MSAAIAALASYGGSDSDSDSGSDAEGRPGLSAQVAGADAVLHLAAAAAAAAPATQQVLLP
VVDSAPAVSVKEDVETGVHLDPTTKEVQYNPKYDTMFAPEFGPVNPFRTQQMAAPRNMLS
GYTEPAHINDFMFEQQRRTFATYGYALDPSIDNYEVSTKYIGSVEEAEKNQGLTVFETGQ
KKIEKRKKFKENDASNIDGFLGPWAKYVDEKEVAKPSEEEQRELDEITAKRQKKGKHEDD
KPGEEKTVLHVKEMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVS
AVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAIRDICFNNAGNQFLSAAY
DRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRNGEIVQ
EYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPN
GKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVTSGDADGKL
NIWDWKTTKLYSRLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgccatcgctgccctcgcgtcatacgggggctcggattccgattccgactcg
ggctcggatgctgaaggaaggcccggcctttccgctcaggtcgccggggctgacgctgtg
cttcacttggcggcggcggcggcggcggcggcgcccgctacgcaacaggtgttgctgccg
gtagtggactcggccccagcagtgtcggtcaaggaagatgtggaaacaggggttcatctt
gatccaaccaccaaggaagttcaatataatccaaagtatgacaccatgtttgcaccagag
tttgggccagtcaatccatttagaactcagcagatggccgctcccaggaacatgctttct
ggatatacggaaccagcacatattaatgatttcatgtttgaacaacagaggagaacattt
gcaacttatggatatgcactagatccttccatagacaattatgaagtatctactaaatat
attggatccgtagaagaagcagaaaaaaatcaaggtttaacagtgtttgaaacaggacaa
aagaaaatagagaaaaggaaaaaattcaaagagaatgatgcatctaatatagatggcttc
ttgggaccttgggcaaaatatgttgatgaaaaggaggttgcaaaaccttctgaagaagaa
cagagggaactggatgaaataactgcaaaaaggcagaagaagggcaaacatgaagatgat
aaacctggagaagaaaagacagttttgcatgtcaaagaaatgtatgactatcaagggagg
tcttatcttcatgttcctcaggatgttggtgttaacctacgttcgacagtaccccctgaa
aaatgttaccttcctaagaaacaaatccatgtatggtcaggtcatacaaagggagtcagt
gccgtcaggctatttcctctttccggccatctgctcttatcttgctccatggactgtaaa
attaagctctgggaagtgtacggtgaacgaagatgtttgagaacattcattggacacagt
aaagcgattagggatatatgttttaacaatgctggaaaccaattcctcagtgctgcatat
gaccgctatctcaaactgtgggacactgaaacaggacagtgtatttcaagattcaccaac
aggaaagttccttactgtgtcaaattcaatcccgatgaagataagcagaatctttttgta
gcaggaatgtcggataagaaaattgtacagtgggatattcgaaatggagaaatcgttcag
gaatacgatagacatttgggggctgtcaacaccattgtttttgtagatgagaaccgaaga
tttgtgagtacatcggatgacaagagtttaagagtctgggaatgggacattccagtcgat
tttaagtacatagcagagccaagtatgcactcaatgccagcagtgactttatctccaaat
ggaaaatggcttgcctgtcaatcaatggacaatcagattttgatttttggagctcaaaac
agattcaggctaaacaaaaagaaaatcttcaaaggtcatatggtggcaggctatgcttgc
caagtagatttttcacctgatatgagctatgtgacctcaggtgatgcagatggaaagtta
aatatctgggactggaagacaacaaaactctacagtagattaaaagcccatgacaaagtc
tgcattggggcagtgtggcacccacatgaaacatccaaagtgatcacttgtggatgggat
ggtctcattaaactgtgggactga
DBGET
integrated database retrieval system
