| Entry |
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| Symbol |
UPF2
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| Name |
(RefSeq) regulator of nonsense transcripts 2
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| KO |
| K14327 | regulator of nonsense transcripts 2 |
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| Organism |
nss Notechis scutatus (mainland tiger snake)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:nss00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113412316 (UPF2)
03015 mRNA surveillance pathway
113412316 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:nss03019]
113412316 (UPF2)
Messenger RNA biogenesis [BR:nss03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113412316 (UPF2)
mRNA cycle factors
P-body specific factors
113412316 (UPF2)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
1292 aa
MPAERKKSASMEEKETSLSNKEKEFGERRPVSSRDRPKEDIRLGMKREMLKPPEDKKKKM
EEEKRKKDEKEWKKKEDEKIKSEEDQKRKEEEEKQKLEEEEKKKQEEEMKLQQEEAAAKL
KEKEEAHQLHQEAWERHQARKELRSKNQNASESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFHGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKSIINADRET
HTHVSVVISFCRHCGDDIAGLVPRKVKSAADKFNLSFPPSEIIGAEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPVPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQTKDSGKDDSRELKETKENKDISGTEDLELDLENLDINDETLDLDCGEEAE
DLTKKLLDEQGKKQGADSTGAENSDGKQAARKQEDEETSTGSHLKLIVDAFLQQLPNCVN
RDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVAEDL
CSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKSDTLHCLKMLLSDFSHHHI
EMACTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPA
EKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWHDHEVKDYVICCMINIWNVK
YNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYN
YRMVESAVIFRTLYSFTLFGVNSDGTPSLLDPPEHLFRIRLVCTILDTCGQYFDRGSSKR
KLDCFLVYFQRYVWWKKSLDVWTKDHLFPIDIDYMISDTLELLRPKIKLCNSLEESMRQV
QELEREFLIKLGLMNDKDSKDSMTEGENLEEDEDEEEAGVEIEEQSGNESEINEPEEEEG
SENDDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKRVPCAEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNK
QQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPA
PANTNRERRPRYQHPKGAPNADLIFKTGGRRR |
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| NT seq |
3879 nt +upstreamnt +downstreamnt
atgccagctgagcggaagaagtcggccagcatggaagaaaaagaaacctccttaagcaac
aaagagaaggagtttggcgagaggcggcctgtgagcagccgggacagacccaaagaggac
atcaggctgggcatgaagagagagatgctcaagccacccgaagataaaaagaagaaaatg
gaggaggagaagcggaaaaaggacgagaaggaatggaagaagaaagaggacgagaagata
aaatctgaggaggaccaaaagagaaaggaggaggaggagaagcaaaagcttgaagaggaa
gagaagaagaagcaagaggaagagatgaagctgcagcaggaagaagcggctgccaaattg
aaagagaaagaagaggcccaccagttgcaccaggaagcctgggagcgccaccaggcccgg
aaggagctgcgaagcaaaaaccagaatgcctcggagagccgcccagaagagaatttcttc
agcaggctggactccagcctgaagaagaacacggccttcgtgaagaagctgaagaccatc
actgagcagcagagggactccttgtcccacgacttccatggcctcaacctgagcaagtac
atcgctgaggccgtggcctccatcgtggaggccaagctgaagatctctgacgtgaactgt
gccgtgcatctctgctccctcttccaccagcgctacgccgacttcgcgccctcgctgctc
caggtctggaagaagcacttcgaggccaggaaagaagagaagacacccaacatcaccaag
ctgcggaccgacctgcggttcatcgccgagctgaccatcgtggggatcttcaccgacaag
gagggcctctccctcatctacgagcaactgaagagcatcatcaacgctgaccgcgagacg
cacacccacgtctccgtggtcatcagcttctgccggcactgcggtgatgacatcgcgggc
ctggtgcccaggaaggtgaagagcgcggcggataagttcaacctgagcttcccgcccagc
gagatcatcggcgctgagaagcaacagcctttccaaaacctgctgaaggaatatttcacc
tcgctgaccaaacacctcaaaagagaccacagggaactgcaaaacatcgaaaggcaaaac
aggcgtattctacattctaaaggggaattgagtgaagaccggcataaacaatatgaagaa
tttgctatgtcttatcagaagctgttggcaaattctcaatctttagcagatctcctggat
gaaaatatgccagatctccctcaagacaaaccagtgccggaagaacacggtccaggaatt
gatatttttacccctggcaaacctggggaatatgatttagagggtggaatctgggaagac
gaagacgccaggaacttctacgagaatcttattgatttaaaagcgtttgtgccagctatc
ctgtttaaagacaatgaaaaatgttctcagaccaaagattccgggaaagacgactctaga
gagctaaaagaaactaaggaaaataaagatatatccggcacagaagatctagaactggat
ctagaaaacttggatattaatgatgagacccttgatctggattgtggggaggaagcagaa
gatctcacaaaaaagcttcttgacgaacaaggcaagaaacagggagcagatagcaccgga
gctgaaaatagtgacggaaagcaagctgcaagaaaacaagaagatgaagaaacgagtacc
ggatcacacctaaaacttatagtagatgcttttcttcagcagctcccaaattgtgtaaat
agagacctcatagacaaggcagccatggatttttgcatgaatatgaacaccaaggctaac
cgaaggaaattagtccgggcccttttcatcgttcctcggcagaggctggatttgctgcct
ttctatgcacggctggttggaacgttgcatccctgtatgtccgatgtagcagaagacctg
tgttccatgctgaagggggacttcagatttcatgtgagaaagaaggaccagatcaacatc
gagacgaagaacaaaaccgtgaggttcattggagagctaactaagtttaagatgttctcc
aaaagtgacacgctgcattgcttgaagatgctcctgtctgacttctcccatcaccacatc
gagatggcatgcactttgctagagacctgtggaagattcctcttcaggtctccagactcc
catttgaggaccagcgttcttttggagcaaatgatgcggaagaaacaggcaatgcacctg
gacgcacgctatgtcacgatggtggaaaacgcctactactattgtaaccctcccccagcg
gagaaaacggtgaaaaagaagcgcccccccctccaggaatacattcggaaactgctctat
aaggatctctccaaagtcaccacggagaaggtcctgagacaaatgcgcaaactgccttgg
catgaccatgaagtgaaagattacgtgatatgctgtatgatcaacatttggaatgtgaaa
tataatagcattcactgtgtagccaatcttctggcaggactggtcctttatcaagaggat
gttggaattcatgtcgtggatggagttctagaggacattcgattagggatggaggttaat
cagcctaaatttaatcagcggaggatcagcagtgctaagtttctgggcgagctgtacaat
tacagaatggtcgaatcggcggtcatctttcggactctgtactcattcacgttgttcggg
gtgaactccgacggcacgccgagtctcctggacccccccgaacaccttttccgcatccgg
ctggtctgcaccatcctggacacctgcgggcagtacttcgaccggggatccagcaagcgg
aaactcgactgcttcttggtctactttcagaggtatgtttggtggaagaaaagcctggat
gtatggacaaaggaccacctcttccctatagacattgactatatgatcagcgatacgtta
gaacttctgagaccgaaaataaaactctgcaattctctggaagaatccatgaggcaggta
caagaactggaaagggaattcttaatcaaactaggtcttatgaacgacaaagactctaag
gattccatgactgaaggagagaacttggaggaggatgaggacgaagaggaagctggagta
gagatcgaagaacaatctggaaatgaaagcgaaataaacgagccagaagaggaggagggg
tcggagaatgatgatgatgaaggagaagaggaagaggaagaaaatactgattatcttact
gactctaataaggagaacgaaacggatgaagagaacacggaagtaatgattaaaggaggt
ggtctgaaacgggtcccctgcgccgaagatgaagattttattcaggcgttggataaaatg
atgctggaaaatttacagcagagaagtggcgagtcggtgaaagtacaccagttggacgtg
gccatccctctgcaccttaagagccagctgaagaaggggcctccccttgggggtggggag
ggggagtctgaatccggagacaccatgccgttcgtcatgctgacccggaaaggcaacaag
cagcagtttaaaatcctaaacgtgccgatgtcttctcaactggccgccaatcactggaac
cagcagcaggccgaacaggaagagcgcatgcggatgaaaaagttaaccttggacatcaac
gagcggcaggaacaggaggactatcaagaaatgatgcaatccttggctcagcggccagct
ccagcaaatacgaaccgagaacggcgacctcggtaccagcatcctaagggagcccctaat
gccgatctcatctttaaaactggtggaaggagacgttga |
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