Notechis scutatus (mainland tiger snake): 113412413
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Entry
113412413 CDS
T09026
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113412413 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113412413 (COL5A2)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113412413 (COL5A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
PSP94
Motif
Other DBs
NCBI-GeneID:
113412413
NCBI-ProteinID:
XP_026523802
UniProt:
A0A6J1TYP0
LinkDB
All DBs
Position
Unknown
AA seq
1497 aa
AA seq
DB search
MMAIWTQRRTFVILIAFLGHLGTIRTQEEDEFEGDLEEEEIACTQNNQVYLNRDIWKPSD
CEICVCDNGAILCDAIQCLEVLECENPRVPPGECCATCPNTGRTGFEGSIGRGLKGQKGE
PGVVPVVTGIRGRPGQSGPPGSQGPRGARGPKGRLGARGPPGIDGEPGVPGQPGDPGPPG
QPSTGPDGIGRPFTSQLAGQEDAFSQIMMPGPVGPVGPRGSPGNHGKPGPIGPPGPPGEV
GDPGSMGSPGVRGPEGPPGKPGEDGEPGRPGQAGEVGFPGSPGARGFPGTPGHQGLKGPR
GEKGLDGPKGEIGAHGSKGESGPSGQMGAAGPMGPRGMAGERGRIGPQGVPGARGSHGMP
GKPGPAGPLGIPGSSGFPGIPGMKGEAGPTGARGPEGPQGPRGETGAPGPPGLFGLPGAL
GTDGSPGTKGPSGSPGISGPHGLPGPPGSPGPQGSTGPSGIRGQMGDPGVPGFKGEAGPK
GEPGPHGPQGPIGPLGEEGKRGPRGDPGSVGVPGSVGERGPPGNRGFPGSDGLPGPKGAQ
GERGPAGASGPKGSQGDPGRMGEPGLPGARGLTGNPGVSGPEGKLGPLGAPGEDGRPGPA
GPIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVSGQRGAPGKDGEVGPAGPVGPHGPA
GERGEQGPPGPTGFQGLPGTPGPPGEGGKPGDQGVPGDPGVPGPLGPRGERGHPGERGNP
GSSGLQGEKGMAGGQGPDGPKGNPGPSGASGDQGPPGLQGMPGERGLAGTPGPKGDRGSV
GEKGGEGTAGNDGARGLPGSLGPNGPAGPAGEKGEPGPRGLVGPAGSRGNPGSRGENGPT
GPVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLSGSHGPPGPPGVHGLKGGRGTK
GPPGATGFPGSAGRVGPPGLTGAPGPVGPLGEPGKEGPPGVRGDPGSHGRVGDRGPAGPS
GSPGDKGDSGEDGQHGPDGPPGPSGTTGQRGIVGMPGQRGERGMPGLPGSAGTPGKQGPT
GPTGDKGPSGPIGPPGAPGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGEPGPAGLPGSQ
GISGTPGPVGSPGDAGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQK
GHRGFTGLQGLPGPPGPTGEQGNAGIPGPFGPRGPPGPIGPSGKEGNPGPHGPVGPPGVR
GTLGEAGPEGPPGDPGPPGPPGPPGHLTAAIGDIMGHYDDGLPDPLPEFTEDEAAPDDSN
KTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLRSCHPSKKSGEYWIDPNQGCVED
AIKAFCNMETGETCIAAKPAIIPRKTWWTSRSSDLKPIWYGLDMNRGSQFVYGDNQSPNT
VITQMTFLRLLSKEASQNITYHCKNSIGYMDDQAKNLKKAVVLKGANDHDIRAEGNNRFR
YTVISDTCSKHNGNVGSTIFEYKTQNVARLPIIDIALVDVGGADQEFGVEIGPVCFV
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atgatggccatctggacccaaagaagaacgtttgtcattcttattgcttttctgggacat
ttggggacgatacgaacacaagaagaggacgagtttgaaggggacttagaagaagaagaa
attgcctgcactcagaataaccaggtgtatctgaatagggacatctggaaaccttcggat
tgcgagatttgtgtgtgtgacaatggagccattctgtgtgatgctattcagtgtctcgaa
gtactagaatgtgaaaacccacgggtcccccctggagagtgttgtgctacatgcccaaac
acaggccggactggatttgaaggttctatcggtagaggactaaagggtcaaaaaggagaa
cctggagtagtaccagtggttacaggtatacgaggacggccaggacaatctggacctcca
ggttcacaaggaccaagaggagctcgaggacccaaaggaagactgggtgcccgtggtcct
ccaggcatagatggggaacctggtgtacctggacaacctggtgatcctggacctcctgga
caaccatccacaggaccagatggcataggcagaccatttacatctcagctggctggacaa
gaggatgccttttcacagataatgatgcctggtccagtgggtcctgtgggtccaagagga
tctccaggtaatcatgggaaaccaggtcctattggacccccaggtcctccaggtgaagtt
ggtgacccaggatccatgggttcacctggtgttcgtggcccagaaggtcctccaggaaaa
cctggtgaagatggcgaacctggcagaccagggcaagctggggaagttggatttccagga
tctccaggagctcgaggttttcctggtacaccaggtcatcaaggtctaaagggccccaga
ggagagaaaggacttgatggccctaaaggtgaaattggagcccatggatccaagggtgaa
tcaggcccatcagggcagatgggtgcagcaggtcctatgggtccccgtgggatggcagga
gaaagaggccgaattggaccacagggcgttccaggggctcgtggttcacatggcatgcct
gggaaaccaggaccagcgggtcctctcggtatacctggttcatcaggttttcctggcata
cctggcatgaagggtgaagctggtcccacaggtgcacgtggtccagaaggtcctcaagga
ccaagaggagaaacgggcgccccaggtcccccaggattatttggtcttcctggtgcttta
ggtacggatggttccccaggaacaaaagggccttcaggatctccaggaatttcagggcca
catggcttaccaggtccacctggttctccaggaccacaaggcagcacaggtccttctggc
attcgaggacaaatgggagatcctggtgttccaggtttcaaaggagaagctggccccaaa
ggagagccaggtccccatggcccccaaggaccaattggacctcttggtgaagaagggaaa
agaggtcctcgtggtgatccaggatcagttggtgtccctggatctgttggagaaaggggt
cctcctggtaaccgtggctttccgggatctgatggtttgccaggaccaaagggagctcaa
ggggaacgtggtcctgcgggggcttcaggccctaaaggaagccaaggggatcctggtcgc
atgggtgaacccggtctcccaggtgccaggggtctgacagggaatccaggagtctcaggt
ccagaaggaaaacttggtcctttgggtgctccaggagaagatggtcggccaggtcctgca
ggtccaattggaattagaggccagccaggcagcatgggtcttcctggaccaaaagggagc
agtggagatcctggaaaacccggagaagcaggaaatgctggtgtttcggggcagaggggg
gcacctggcaaagatggtgaagttggccccgctggtcctgttgggccccatggaccagca
ggagaaagaggagaacaaggtcctccaggtcccacaggttttcagggtttaccaggtacc
ccaggccctccaggagaagggggaaaaccaggtgatcagggtgttcctggtgatcccgga
gtgccaggccccttaggtccaaggggagaacgtggccatccaggtgaaagaggaaaccca
ggatcatctggtcttcagggggaaaagggtatggctggaggtcaaggtcctgatggtcca
aagggaaatccaggcccttcaggagcatcaggagatcagggccctcctggtcttcaggga
atgcctggagagagaggcctagctggaacacctggccccaagggtgatcggggcagcgta
ggagaaaaaggaggcgaaggcacagctggcaatgatggggccagaggactcccaggttca
ttaggcccaaatggccccgcaggtccggctggtgaaaagggtgaacctggtcctcgaggt
ttagttggccctgcaggctctcgtggaaatcctggttcccgtggtgaaaatggcccaact
ggtccagttggatttgctggccctcagggccctgatggtcaacctggtgtgaaaggtgaa
cctggggagcctgggcagaaaggagatgctggatccccaggacctcaaggtctttcaggt
tctcatggtccaccaggccctcctggggttcatggactcaaaggaggccgtggtacaaaa
ggaccccctggtgctacaggttttcctggatctgctggaagagttggacccccaggactt
acaggagctcctggtccagttgggcctcttggtgaaccaggcaaagaaggtcctccaggt
gttcgtggagatcctggttctcatggtcgagtaggagatagaggcccagcaggaccatct
ggcagccctggagacaaaggagactcaggagaagatggacaacatggtcctgatggcccc
ccaggtccatctggaactactgggcagagaggtattgtgggaatgcccggccagcgtgga
gaaaggggcatgcctggcctgccaggctctgccggaactcctggaaagcaaggtccaact
ggaccaacaggagacaagggtccttctgggcctattggtcctccaggtgctcctggacca
gtgggtgaagcagggccagagggtcctgctggtaatgatggcactcctgggcgagatgga
gctgttggtgaaaggggtgatcgtggtgagcctggacctgcaggacttcctggttctcag
ggtatttcaggtaccccagggccagttggatctccaggggatgcgggacaaagaggtgaa
ccaggttcacgaggcccagtaggtcctcctggccgtgctggaaaacgaggtttgcccggt
ccccaaggtccacgtggcgacaaaggtgacaatggtgatcgaggggacaggggacagaaa
gggcatcgaggtttcactggcctgcaaggtctccctggacctcccggacctactggtgaa
caaggcaatgctgggattccaggcccatttggcccaagaggtcccccaggtcctattgga
ccttctggtaaagaaggaaatcctggaccacatggacctgttggacctcctggtgtaaga
ggaactttaggagaagcaggacctgagggccctcctggtgatcctggtcccccaggccca
ccaggtccccctggccatcttactgctgcaattggtgacattatgggacattatgacgat
ggtctaccagacccactaccagagttcactgaagatgaagctgctccagatgacagcaat
aaaacagatccaggagtccatgccacactgaagtcactcagtagccagatcgaaaccatg
cgcagccctgatggatccaagaagcacccagcccgtacttgtgatgatttaagatcatgt
catccatccaaaaagagtggagaatattggattgaccctaatcagggctgtgtagaagat
gcaatcaaagcattctgcaatatggaaacaggagaaacatgtatagctgcaaaaccagct
attattccacgtaaaacatggtggacaagtaggtcatctgatctaaaaccaatatggtat
ggacttgatatgaacagaggttcacagtttgtttatggcgataatcaatcacccaacaca
gtgattacgcaaatgactttcctgcgcttactctccaaagaggcctctcagaatattacc
tatcattgcaaaaacagtataggttacatggatgaccaagctaagaacctgaagaaggct
gtggtgctgaagggagccaatgaccatgatatccgagctgaaggaaataaccgttttaga
tacactgtcatttctgacacttgctctaaacacaatgggaatgtgggcagcacaatcttc
gaatacaaaacacagaatgtggcacggttacctatcattgatattgccctagtagatgtt
ggaggtgcagaccaagaatttggagtagagattggaccagtttgttttgtgtaa
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