Notechis scutatus (mainland tiger snake): 113412414
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Entry
113412414 CDS
T09026
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113412414 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113412414 (COL3A1)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113412414 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
113412414
NCBI-ProteinID:
XP_026523803
UniProt:
A0A6J1U5C1
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MMSCVQRAVLFFFTVSQFSVILAQQQEVVYGECSHLGQLYSDRDVWKPEPCQICVCDSGS
VLCDEIICEEKELSCTNPEIPFGECCPICPNPTAVPPEKTVIRGPQGQKGDPGPPGRNGS
PGIPGLPGDPGQPGPPGICQNCPDGTIFSSQYGYDVKAGPEPQIGTGGGFPGPPGPSGPP
GPVGQPGSPGPHGYQGPPGEPGQSGAPGSPGPQGMIGPPGPSGKDGEPGRPGRPGERGFP
GLPGHKGPSGMPGMPGMKGHRGFDGKDGSKGDAGAPGLKGENGLPGENGSPGPMGPRGLP
GERGRAGLPGTAGGRGNDGSPGAAGQPGPPGPPGPSGFPGTPGFKGENGPAGPAGSSGPP
GPKGDAGAPGQPGGSGPPGPGGRDGNPGAKGPPGAAGMPGAPGLSGARGPPGPSGTNGIP
GQRGPSGEPGKNGGKGEPGPRGERGENGTPGSAGPPGEEGKAGAPGQPGTNGIPGTAGER
GAPGFRGPAGPSGPGGEKGAPGERGGPGSTGPRGAPGEPGRDGSPGLPGMRGLTGSPGSP
GVDGKPGPSGSPGESGRSGPPGPAGPRGQPGVMGFPGPKGNEGSPGKNGERGGSGPPGGP
GLPGKDGEPGGQGPPGPAGGPGERGEQGATGSPGFQGLPGPSGAPGESGKPGDPGPKGEN
GLPGLPGGKGENGIPGERGAPGNAGLPGARGGPGPAGPEGGKGPGGPVGPPGGMGPPGLQ
GMPGERGASGNPGPKGEKGEPGSRGGDGTPGKDGVRGPVGSIGPPGPSGQSGDKGEPGPA
GPHGPSGPRGGPGDRGEQGPPGPAGFPGAPGQNGEPGGKGERGLPGERGESGPPGIAGPS
GGPGAPGPAGSSGSKGERGSPGPPGASGFPGGRGLPGPPGNNGPSGPPGNAGPPGKDGHS
GPPGSTGPSGPPGGQGPKGEPGVPGEKGPAGPKGNDGITGPSGNSGIPGPRGIVGLPGSR
GPIGSIGPSGPKGEDGKPGSNGSPGERGPPGPGGPPGINGAPGEPGRDGNPGSDGLPGRD
GSAGPKGDRGENGPAGVPGSPGHMGPPGNAGAPGKSGERGHSGPAGPAGPAGPAGARGAP
GPAGARGDKGEAGERGLNGMKGHRGFPGNPGSPGPVGPLGPPGQSGSPGPAGARGPPGPS
GSPGKDGRVGYAGPIGPPGPRGNRGESGQAGPPGHSGPPGPPGQPGSPGPCCNGIINGGG
GGDKGGGYYGDQASEGKIDVGEILASLKSVNSQIENIISPDGSRKNPARNCRDLKFCHPE
LSSGEYWIDPNQGCKLDAIKVFCNMETGETCLSANPSSVPKKNWWTSPGPEKKHIWFGET
MNGGFQFSYGDPDLPEEVADVQLAFLRILSSRASQNITYHCKNSIAYMDEASGNVKRALK
FMSSTDSEIKAEGNNKFTYTVLEDGCTKHTDEWSKTIFEYRTRKTMRLPVIDIAPFDIGA
SNQEFGVDVGPVCFL
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctgtgtgcagagagccgttttgttcttctttactgtgtcacaattctccgtc
attttggcacaacaacaagaagttgtttacggagaatgcagccaccttggccaattgtat
tctgaccgagacgtgtggaaaccagaaccatgtcaaatttgcgtgtgtgactcaggatct
gttctttgtgatgaaatcatttgtgaagaaaaggagttatcttgtacaaatccagagatt
ccatttggagaatgttgccctatttgtccaaatccaacagcagttcctcctgaaaaaact
gtaatccgggggccccaaggtcaaaaaggagaccccggcccacctggaagaaatggatcc
cctggtatccctggcctgccaggagaccctggtcaacctggcccccctggaatctgccaa
aattgcccagatggaactatcttttcttcccagtatggctatgatgtgaaggctggacca
gaaccacaaattggaactggtggtggctttcctggccctcctggtcctagcggccctcct
ggtcccgttggtcagccaggttcacctggacctcatggataccaaggtccacctggtgaa
cctgggcaatctggagctcctggttctcctggcccccaaggaatgataggaccccctgga
ccttcaggaaaagatggagaacctggaagacctggaagacctggagaacgtggatttcct
ggccttcctggccacaaaggacctagtggaatgcctggaatgcctggaatgaaaggtcac
aggggttttgatggaaaagatggtagcaaaggtgatgcaggtgctcctggtctaaagggt
gaaaatggccttcctggagaaaatggatccccaggaccaatgggacccagaggtctgcct
ggtgaaagaggacgagctgggcttccaggaactgcaggtggtcgtggtaacgatggtagc
cctggagcagcgggccaacctggtccaccaggccctcctggaccttcaggatttcctggt
actccaggttttaagggtgaaaacggtcctgctggtcccgcaggctctagtggacctcct
ggaccaaaaggagatgctggtgctccaggccaacctgggggttctggccctcctggtcct
ggaggacgtgatggaaatcctggtgccaaaggccctccaggtgctgctggaatgcctggt
gctcctggtctaagtggagctcgtggtcctcctggtccttctgggactaatggaatccct
ggacaaagaggtccatctggtgaacctggtaaaaatggtggaaaaggagagccaggacca
agaggtgaacgtggtgaaaatggcacccctggtagtgctggtcctccaggagaagaaggc
aaggcaggagcacctggtcaacctggcaccaatggcatacctggaactgcaggagaacgg
ggtgctccaggattccgcggtcctgctggtccgagtggacctggaggtgaaaagggggca
cctggtgagcgaggtggtccaggcagtactggtccaagaggagctcctggagaaccagga
cgggatggcagccctggccttccaggaatgagaggcttaacagggagtccaggtagtcca
ggagtagatggaaaaccaggtccttctggttcaccaggagaatcagggcggagtggtccc
ccaggaccagcaggtccacgaggtcaaccaggtgtgatgggcttccctggtccaaaaggc
aatgagggttcaccgggtaaaaatggggaaagaggaggatctggacctcctggcggaccg
gggctacctggaaaagatggtgaaccaggaggacaggggcccccaggacctgctggtggt
cctggtgaaagaggagaacaaggagcaacaggttcacctggatttcagggtctacctggt
ccttcaggagctcctggagagagtggaaaacctggagatccaggcccaaaaggtgaaaat
ggacttccaggacttccaggaggaaagggtgaaaatggcatcccaggcgaacgaggcgca
ccaggaaatgcaggtctccctggagctagaggtggtcctggccctgctggccctgaaggt
ggaaaaggccctggtggtccagttggtcctcctggtggtatgggacctccaggattgcaa
ggaatgccaggagagagaggagcttctggaaatcctggacctaagggagaaaagggagag
cctggaagcagaggaggcgatggtacacctggtaaagatggagtacgagggcctgtagga
tccattggacctcctggtccatctggccaatctggtgataagggagaacctggacctgct
ggaccccatggcccatcaggtccccgtggtggtccgggtgatcgtggtgaacaagggcca
cctggtcctgctggcttccctggagcacctggacaaaatggagaacctggtggaaaagga
gagagaggccttccgggtgaacgaggtgaatctggacccccaggaattgcaggtccatca
ggaggccctggtgcaccaggtccagctggatcatcaggatctaagggagaacgtggtagt
ccaggtcctccaggtgcatctggctttcctggaggtcgaggcttacctggtcctcctggt
aacaatggaccgtcaggaccacctggcaatgctggtccaccaggcaaagatggacattct
ggcccacctggttctactggcccatctggtcctccaggtggtcaaggtccaaaaggtgag
ccaggtgtaccaggagaaaaaggcccagcaggaccaaaaggaaatgatggtataacaggt
ccctcaggaaacagcggcatacctggaccacgtggtattgtaggattgccaggatcaagg
ggaccaatagggtctattggtccatctggtcccaagggtgaagatggcaaaccaggaagt
aatggcagtccaggggaacgaggaccaccagggccaggaggtcctcctggcatcaatggg
gcaccaggagaaccaggcagagatggtaatcctggatcagatggtctcccaggtcgtgat
ggatctgcaggaccaaagggtgatcgtggtgaaaatggtcctgctggtgtgcctggatct
ccaggacacatggggccaccaggtaatgctggtgcacctggaaaatctggtgaaagagga
cattcgggtcctgctggtcctgctggcccagctggcccagctggtgctcgtggtgctcct
ggtcctgctggagcacgtggtgataaaggtgaagctggagaacggggtcttaatgggatg
aagggtcaccgaggatttcctggtaacccaggatctcctggtccagtgggtccactgggt
cccccaggtcaaagtggaagtccaggacctgcaggtgctagagggcctcctggaccaagt
ggctcacctggcaaagatgggagagttggttatgcgggccccattggccctccaggtcct
cgtgggaacagaggcgaaagtggacaagcgggtccacccggtcacagtgggcctcctggg
ccccctggtcaacctggatcacctggtccatgctgcaatggtatcattaatggtggtggt
ggtggtgataaaggaggtggctactacggagatcaggcatctgagggcaaaattgatgtg
ggtgagattttagcttcactgaaatcagtcaacagccagattgaaaacatcattagccct
gatggttcacggaagaatcctgcccgtaactgcagagatctgaagttctgccatcctgaa
ctttcaagcggagagtattggatcgaccctaaccaaggttgcaaactggatgccatcaaa
gtattctgcaacatggaaactggggaaacatgcctcagtgccaatccgtcaagtgttcca
aagaagaactggtggacaagcccaggtcctgaaaagaagcacatttggtttggagaaact
atgaacggaggcttccagttcagctatggagatccagatcttccagaagaagttgcagat
gttcaattggcattcctcagaatcctttcaagccgagcctctcaaaacatcacctaccat
tgcaaaaacagcattgcctatatggatgaagccagtggaaatgtgaagagagcactcaag
ttcatgagttctactgatagtgaaatcaaggcagaaggaaacaacaaattcacatacaca
gttctggaagatggctgtactaaacatactgacgaatggagtaaaaccatctttgaatac
agaacacgcaagacaatgaggttgccggtgatagatattgcacctttcgacattggcgct
tccaatcaagaatttggtgtggacgttggcccagtttgcttcttataa
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integrated database retrieval system
