Notechis scutatus (mainland tiger snake): 113413130
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Entry
113413130 CDS
T09026
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
nss
Notechis scutatus (mainland tiger snake)
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nss03000
]
113413130 (RC3H1)
04121 Ubiquitin system [BR:
nss04121
]
113413130 (RC3H1)
Transcription factors [BR:
nss03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113413130 (RC3H1)
Ubiquitin system [BR:
nss04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113413130 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
Prok-RING_4
zf-RING_2
zf-C3HC4_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
PaaA_PaaC
zf-CCCH_UNK
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-CCCH_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
113413130
NCBI-ProteinID:
XP_026524959
Ensembl:
ENSNSUG00000013639
UniProt:
A0A6J1UB10
LinkDB
All DBs
Position
Unknown
AA seq
1126 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEHLPVNSALLQLVGAQMPEQQPITLRSGAEDTKHYEEARKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLTRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRRECPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPAAAIISDE
ATVDLPSRKPSTLPNGIVSPGSTVTQLISRGTDSSYDSVMKPGKMDHHSSSAPGSPPDLL
EPVSKSSHPVPPRGPTELPPISVGKQLQIVPRGSQLYPAQQTDVFYPDPRGTAPPFEPPP
YQAGVYYPPAQSLQCMSRFVRPPSSIPEPGPPFVEQHYAPYLQDRIMNSQYSTQPQQYPP
MSQPVYPPHYDSRRVYPAAQPYQREDIIRGSPVPIEISPPAVSSYVPETRDRYQQVEGYY
PVGPHMNQIRPSYHREPYSRAPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFASSPTL
PHSLHTDEYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDIVAVGLVEMVN
VDSKGMRDQRLDLQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNPGPMQAMAVQ
GASAKPVSVSDYSPYGTHSAWGSSPYSPHQNVPSQGRLGDRERLSMTDIANHGKSLPSSE
REQQLRLELQQLNHQISQQTRGLEAVSNRLLLQREATPLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMETQSSLDVKNKANASKQTENGQQGKIPPEDLSLAFSDLP
NGSAPTQEIIGLLSNKTTALNLSEDTDVGAGDQDTQRTGATPTSAP
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgccctatttgcacacaaaca
ttcgacgaaacgatccggaaacccatcagtctaggttgtggccacacagtctgcaagatg
tgcctgaacaagctccatcggaaagcatgtcctttcgaccagaccactatcaatacagac
atagaacatcttcctgtgaactcagctttgctgcagcttgtgggtgctcaaatgccagaa
cagcaaccaataactctacgcagtggtgctgaagatactaaacattatgaggaagccagg
aaatgtgtggaagaactagcattataccttaaaccactcagcagtgcaagaggtgtagga
ttgaacagcacaactcagagtgtgcttagtcggcccatgcaaaggaagcttgtgacatta
gttcattgccagctggtagaagaagaagggcggatccgagctatgcgtgcagcccgatct
ctaggtgaaagaactgttactgagcttattcttcagcaccagaatccccagcaattatct
tcaaacctttgggctgcagtgagggctagaggctgtcagttccttggaccagcaatgcag
gaggaagccctgaagttagttcttttagctttagaagatggatctgctttatctcgaaaa
gtcttggttctctttgtggtacagaggttggagccacgatttcctcaggcttctaaaacc
agcattgggcatgttgtccagcttctttacagagcctcctgtttcaaggtgactaaacgt
gatgaggattcctccctaatgcagctgaaggaggaattcagaacatatgaagcgctgaga
cgagaacatgattcccaaattgtacaaattgctatggaagctggtttgcggatagctcca
gatcagtggtcttcgttattgtatggagaccagtctcacaaatcccacatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacagagtgttcaggaattaacaattgct
ctccagaggactggtgatccagctaatttgacccggcttcgacctcatcttgaacttctt
gcaaatattgatcctagtccagatgctccaccacccacgtgggaacagcttgagaatgga
ttagttgctgtacggactgtggtacatggactggttgattacatccagaatcacagcaaa
aagggagcagatcagcaacagccacctcagcacagcaagtacaagacatatatgtgtcga
gatatgaagcagagaagagaatgcccccgtggggccagctgcacatttgcacactcacag
gaagaactagaaaagtttcgcaagatgaacaaacgtctagttcctcgaagacctttgagt
gcctctttgggtcaactaaatgaagtgggcctgccagcagcagctattatctcagatgaa
gcaacagtggacttacccagtagaaaaccctctaccttgccaaatgggattgtttcacca
ggcagtacagtgacacaacttatctctcgtgggaccgactccagttatgactcagtcatg
aaacctgggaagatggaccaccacagtagcagtgcccctggatcacctcctgatttgctg
gaacctgtttccaagagctctcacccagtgcccccccgaggacctacagagttgcctcca
atttcagtaggcaagcagctccaaatagttccccgaggttcccagttgtacccagctcag
caaactgatgtgttctatccagatcctcgaggaacagctcccccatttgaacctccaccc
tatcaagcaggtgtatattatcctccagctcaatcactgcagtgcatgtctcgatttgtc
cgacctccatcatctattcctgaacctggtcctccttttgtagaacaacattatgcaccc
tatctccaagatcgcatcatgaactcgcaatacagcacacagccacagcaataccctccc
atgagtcaacctgtatatcccccccattatgacagcaggcgtgtgtatcctgctgctcag
ccataccaacgggaagatattatccgaggaagtcctgttccaattgaaatttctccacct
gctgtatcatcgtatgtacctgaaacaagagacagatatcaacaagtggagggctactat
ccggttggaccacatatgaatcagattagaccttcatatcatagagagccgtatagtcgg
gctccccctcagccacatcctagtttagatgaattgcatcgaaggcgaaaggagattatg
gctcagctggaagaaaggaaggtcatctccccaccaccatttgcatcatcaccaaccctg
cctcattctttacatactgatgagtatttggatgaagacctgaaggtagcaggaaaatat
aaaggaaatgattatagccagtactctccctggtcgtgtgacactattggctcctacatt
ggaaccaaagatgcaaaacccaaagacattgtggcagtgggtcttgtggagatggtgaat
gtggacagcaagggaatgcgagatcaacgtttggatttacaaaggagagcagccgagact
ggtgatgacgatcttattccctttggagataggcctacagtatcaaggtttggtgccatc
tcacgtacctccaaagcaatgtaccagaatccaggccccatgcaagccatggcagttcaa
ggggcttctgcaaaaccagtcagtgtttcagattacagcccatatggaacacacagtgca
tggggaagttcaccatactcaccccatcaaaatgtaccttctcagggacggcttggtgac
agggagagattgtctatgacagacattgctaatcatgggaaatctttgccatcgtctgag
agagaacagcagcttcgtcttgaactgcagcagttaaaccatcagataagtcagcagaca
cgaggacttgaggcagttagtaacaggctgctgttgcagagggaagcgacccctttggca
ggccaaccacagcccccaccaccacctcctaagtggcctggaatgatctcaagtgaacag
ctgagcttggagctgcaccaggtggagagggaaatcgggaagagaacccgggaactaagc
atggagacccagtcttcattggatgtgaaaaacaaagcaaatgctagtaaacagactgaa
aatggacagcaaggcaaaataccacctgaagatctttctctagcattcagtgatcttcca
aatggatctgccccaactcaagaaattataggccttctgtcaaacaaaactacagctctg
aacttgtcagaggacaccgacgtaggagcaggtgaccaagatacccagagaaccggagca
acgcccacctctgctccttga
DBGET
integrated database retrieval system
