Notechis scutatus (mainland tiger snake): 113413894
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Entry
113413894 CDS
T09026
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113413894 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113413894 (MTREX)
03041 Spliceosome [BR:
nss03041
]
113413894 (MTREX)
03009 Ribosome biogenesis [BR:
nss03009
]
113413894 (MTREX)
03016 Transfer RNA biogenesis [BR:
nss03016
]
113413894 (MTREX)
Enzymes [BR:
nss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113413894 (MTREX)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113413894 (MTREX)
Spliceosome [BR:
nss03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113413894 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
113413894 (MTREX)
Ribosome biogenesis [BR:
nss03009
]
Eukaryotic type
Pre-60S particles
Helicases
113413894 (MTREX)
Transfer RNA biogenesis [BR:
nss03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113413894 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
113413894
NCBI-ProteinID:
XP_026526271
Ensembl:
ENSNSUG00000002530
UniProt:
A0A6J1U634
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MADAFGDELFSVFEDDSASGSGLKETKGTPEAATLNKPGKQRDGKSVGPAKIQAKKKRDA
EFNSADITTLGKRPKLDDFSTDDLNLADVMPKVKVQAVETIEGCTHEVALPADMDFVALK
ARTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVI
FTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVIFDEIHYMRNSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV
IYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPT
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVN
NLEQQYNEIEIPNEENVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNED
DDFGWGVVVNFSKKSNVKLNSGELDPLYIAEVLLHCSKDSLKNSATEAAKPAKPDEKGEM
QVVPVLVHLLSAISSVRLYIPKDLRPHDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKTQIAVDIKAAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQAT
ALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEENYLSLFRPNL
MDVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
LYVQYYINTCIFKCKIYLQAV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggagacgagctgttcagcgtgttcgaagacgattccgcctctggc
tccggcttgaaggaaacgaaggggacacccgaggcggccaccttaaacaagccaggaaaa
caacgagatggcaaatctgtggggcctgcaaaaatccaagccaaaaaaaagcgtgatgca
gaatttaatagtgcagatattacaactttgggaaagagaccaaagttggacgacttctct
acggatgatcttaatttggcagatgtgatgccaaaagtaaaggtacaggctgttgaaact
attgaaggttgtacacatgaggttgctcttcctgcagatatggacttcgtagccctaaag
gcaagaactggaaaagctgcaaaggaatatccattcattcttgatgcttttcaacgagaa
gctattttgtgtgtggataataatcagtctgttttagtatctgctcatacctcagcagga
aagactgtttgtgcagagtatgccattgctttggctttaagagaaaaacagcgtgtgata
tttaccagtcctattaaagctctcagtaaccaaaaatatcgtgagatgtatgaagaattt
caagatgttggcttgatgactggggatgtcaccatcaatcctacagcatcttgccttgta
atgaccacagagattttgagaagtatgctttacagaggttctgaggttatgcgtgaagtt
gcttgggttatatttgatgagattcattacatgagaaattcagaacgtggtgtggtatgg
gaagaaaccattattttgctccctgataatgttcactatgtgtttctttctgccactata
ccaaatgcacgccagtttgctgaatggatatgtcatcttcacaaacagccttgccatgtg
atttacacagattacagaccgactcctttgcaacattatatttttccagcagggggagat
ggacttcaccttgtagtggatgaaaatggtgattttagagaagataattttaatacagcc
atgcaggtacttcgtgatgcaggtgatctagccaaaggagaccagaaaggcaggaaagga
ggaaccaaaggtccctcaaatgtatttaagattgtaaagatgatcatggaaagaaacttc
caaccagtcattatattcagtttcagtaagaaagattgtgaagcctacgcacttcaaatg
acaaaactggatttcaacacagatgaagaaaaaaggatggttgaggaagtgtttaacaat
gcaattgattgtttgtctgatgaagacaagaagctcccacaagttgaacacgtgcttcca
cttttaaaacgtggtattggaatccatcatggtggcttacttcctattttgaaggaaacc
attgaaattcttttctctgaagggctgataaaagccttatttgctacggagacttttgct
atggggataaacatgccagcaaggacagtgctatttacaagtgcccggaaatatgatgga
aaagatttccgatggatttcctcgggtgaatacattcagatgtctggtcgtgctggccgc
cgaggcatggatgatcgaggaatagtcattttaatggtggatgaaaagatgagcccaaca
attggaaaacagcttctaaaaggatctgctgatcctttaaacagtgctttccatttgacc
tacaacatggtactaaatttgctgcgtgtagaagaaattaatccagaatacatgttagaa
aaatctttttaccagttccagcattacagagctattccaggagtagttgaaaaagttaat
aatttggaacaacagtataatgagattgaaattccaaatgaagaaaatgtgatcatctat
tataaaattagacagcaacttgctaaactgggtaaagaaatagaggaatatattcataag
ccaaagtactgcctgccatttttacaacctggaagactagtaaaagtaaaaaatgaagat
gatgactttggttggggagtggtggttaatttttccaagaaatccaatgtgaagcttaat
tctggtgaactggatcccctctatattgctgaagtcctcctacactgtagtaaagacagc
ctgaaaaattctgcaactgaagccgcaaagcccgcaaaacctgacgagaaaggggagatg
caggttgttcctgtcctggtgcatcttctgtcagccatcagcagcgttcgactctatata
cccaaagacttgaggcctcatgataacagacagagtgtattgaaatcaatacaggaagtg
cagaaacggtttcctgacggagttcctttgctggatcctattgatgacatgggcattaaa
gatccaggtctgaaaaaagtaatccaaaaaatagaagcctttgaacataggatgtattct
catccacttcacaatgattctaatttggaaactgtatacaaactttgtgaaagaaaaaca
cagattgctgtagacataaaggcagctaaacgggaattgaaaaaagcaaggactgtttta
caaatggatgagctcaaatgtcgtaaacgtgttcttagaagattgggctttgcaacctct
tcagatgtcatagagatgaaaggacgagttgcttgtgaaatcagcagtgcagatgagctt
ttgctgacagaaatgatgttcaatgggcttttcaatgatttatctgcagaacaagcaact
gctttattaagctgctttgtatttcaagaaaattctagtgaaatgcccaaactaactgaa
caattggcaggtcctctccgacaaatgcaggaatgtgcgaaaagaattgccaaagtttca
gcagaagctaaattggaagttgatgaggaaaactatctcagtttgttcagaccaaacctg
atggatgtggtatacacatgggccaatggagctacatttgctcatatatgtaaaatgaca
gatgtctttgaaggtagcataattcgatgtatgaggaggctagaagaattgcttagacag
atgtgccaagcagcaaaggccattggaaatacagaactggaaaacaaatttgcagaaggt
ttgtatgtacaatattatataaatacgtgcatctttaaatgtaaaatatatttacaagca
gtttaa
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integrated database retrieval system
