Notechis scutatus (mainland tiger snake): 113414935
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Entry
113414935 CDS
T09026
Symbol
VCAN
Name
(RefSeq) versican core protein isoform X1
KO
K06793
versican core protein
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04514
Cell adhesion molecules
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
113414935 (VCAN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113414935 (VCAN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nss00535
]
113414935 (VCAN)
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113414935 (VCAN)
04091 Lectins [BR:
nss04091
]
113414935 (VCAN)
Proteoglycans [BR:
nss00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
113414935 (VCAN)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
113414935 (VCAN)
Lectins [BR:
nss04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
113414935 (VCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
hEGF
ig
Methyltransf_FA
cEGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
113414935
NCBI-ProteinID:
XP_026527852
UniProt:
A0A6J1UAC7
LinkDB
All DBs
Position
Unknown
AA seq
3095 aa
AA seq
DB search
MFKHFLWIYWTLSMTCALRKVKVEKSPPVKGSLSGRATLPCFFSTLPTLPPSYHNVSEFL
RIKWSKIEQDIGGKDLKETTVLVAQNGNIKIGQGYKGRVSVPSHPEDIGDASLTMVKLRA
SDAGIYRCDVMYGIEDTQDIVSLAVDGVVFHYRASTSRYTLNFKQAQETCLENGAEIASP
EQLKAAYEDGFEQCDAGWLSDQSVRYPIRQPRIGCYGDMMGKEGVRSYGYRLSNETYDVY
CYVGSINGDVFHVTSPDKVTFKEAQTLCEEQGAVLASVGDLHAAWRNGFDQCDYGWLADG
SVRYPASVARIQCGGGLLGVRTLYRFENQTGFPYPDSKFDAYCFKHKENVSDSSMVELNI
PLESESAKSLTELNVIPPKTTLHPYVSSLTSEMVKVKQEKKAPWVINLSTLLPQTVTDIS
DLSEMTQTETVLSDLVEITPIQDISDFDEASSESPIEQIEISPIRTVDAEARNNLSVPLE
TKEETHIGTQSTKIPVEAKSDNKLTTVVIPKELLTSIYESVEEEDKEVLFPDQKLIMSST
ISKVDKTSSSTTTLDENATDTPDSVATSFESKTISTPAYSTGFEIPVLATSDRVVHSTDS
VEKEEHIATPVVSEKMKDTVRFIPTPTASDVFSGSEISIGEGSMFGSESTTRHMPVATDI
NEVEGFSTSYGSEVSSHPLITPTPDLQQETIETDEKYDWTNENTTKQQPILDISREDYPA
MVTEGIEIKQPFIFTDATKTVTPIAISEKDYSSSLILDTIENVISKGSGIVTTDAALTEI
ITEVIPVFQQESVTRDLIRQILVTDPASPSVVPGLHSLPERDITAEGSAYEINYTTTDTS
PSIKIRDYDTVTQSELFPGIIDPKLIATGVPPIESTTKSEHRSSSLDKSVVPISREEAAP
VTKKFDMGEVDISTHSPEGSGIKEEDIGMEPISFSVSATSKPMVVTVIATIVGTTVDKIP
PTSASKPLIIKTQPPLIDREPDEDTSKDVLIIDESISPIKTTTDDDFTGKTVEPEIDTEY
FTSSTITAVSQPTGQPTEVLESQEEPPATSEVATGLENQPNIPVYVFSIPQNDTDSLPGL
WDILDYHILRELDEPPLDGESTTDEPCTASPEDVSEDIIIVDPFYPEIYQLEEDDSEEVD
CENTTAITTPPPLQFINGKQQVTTAPKDIKAEEARSDQILAHSKNVNFLHINETNMVSDN
EFLATIQPNESTQDAAASQKLIEKYDMMEEVFSGDSETTHKDHEIIYLHGQSLSDNNEKS
IQSETEHLEDLTAQPESIGSASPHTTNIELKEDSEQLILTASTQGWLPHSTTVSLDTGAQ
HDTSVLQGNYNTIIGHNILNSYINLLTTTSSTNLLNIPEGSGAVKEDGYKSTSALIKPGR
QKHPSQEIFSDDGNPIPPKPMPSASQSPASLYKETMFIAEHSIAEPFSTDSVTEIIFSTT
KNQINMEEDEEDSTSSMSLNMENSTTVNTENLFNNNEYLSDHIRVVSEGSIAVTQTISPL
KTKEITENRLSIYEESGDGEFWKKPNREILLGGPTSQVVSIDSQFLDGGFGGIDSMTQTT
TQTSFPVRSKYESSKGKEIDSTSSESPLNHAIHTNHTMDVLDAELYGEATDTGIESQVSK
NETYSQRASDKSEAKVLLPFSDKSVVETNEEVITTITIQEQTNLFETSTMTNISPDIRVG
MKLIPELRETDRTAQHSSSTVEYSVVVTNNITLQKGSSEFIVNERMQSLQLEDIRNISPT
VFAKTIDLMDIGSGEESVNDTSSMMLGNYTPTEKEINSKLQLSEPGSGDVDSITYSSIKK
PVSSEFLVEGSKNPIKNESEEPSMVFQHPLVTTLNISNTTIVTLVNQSITGEFVNESKME
QEMPNVLKTRASDKTPHLETEMYYEEKRKNIETESVTQQSEISGTLKFNPHEKELQFDIN
YVTESLQKYPPSYDKTASTLLINADKEEWLEEKTNPAKDSHTLPSPSTMYRTITTAINVP
FLSKQGSENEFFMVHTTAPRNSATLKESSNALKLDTLHPKSSEELSSEEKHEEFERHTDD
SKYAFKYPPMLEDNLSSASDETFPVVSIVHSETSTINWFISEDDQNKDKSYQGEQNVLAA
TDGTSQGQAWMFVKHENKTPASKLFIEPPTTGTIETPQTTLLSKVLSVGNHDGSGEGSGW
QDIIEKKSESFTQLPNWELPLLTRPPHYSDIENTGARVDGSQKGPHAHTEKHDKTTTSDT
DISESFSYESSTNNIKDYEDLIPVAGFKRNYSEDISSFIDIIGTGHGVIPDKTTIIDVDN
LKLNANIEDIIDHTTERPGRHSTYNIYTSAVNIQNTTPEILIDDKVTGSQGSSVGSKFIH
SESILSDHNPTSEVGSGDNAFFTTETAISHDSLKTSILLPTLPLLVSSTISPISSNENTT
DVRYVIEHTESEGMIQPEQPTLSDNQVVADESEISTMSGEGQVQIDKQKPVVLPSTLAYM
PPKTGQTLTTHQPKESTASNQLVSQNLTKSKEMSYKVYEGMKTELTKSIETVMKNLLLTT
QTPELPVTVHLLNDVSEHTEEFMQSTSSSTDSSKHGLPAPETFREVSADTAVTYKPALKD
LSNNTAFPDVELENSFLESITTSDGHVQETKEMPKDATEKTTVFEEFLSKDVIPSSFSHS
DTGDLLEEETPEKVKELNQLDGNSADGSLLWIQSIPSSIPHESKTGGVFGADGEASVWPI
SPPPSADKIVKFQTAQPESTTISSSLVNEHSGPESISDYNKQTINTKDVNANELVTPPFL
LLDVTNGSDFLIGPGEGSVEGSAIQIPGQDLCKSNPCLHGGTCYPRDSFYICTCMPGFSG
DRCEVDIDECQPSPCRNGATCIDGVSTFTCLCLPSYVGALCEKDTETCDYGWHKFQGQCY
KYFAHRRTWDAAERECRLQGAHLTSILSHEEQLFVNRIGHDYQWIGLNDKMYENDFRWTD
GSVLQYENWRPKQPDSFFSSGEDCVVIIWHENGEWNDVPCNYHLTYTCKKGTVACGQPPV
VENANTFGKMKPRYEINSLIRYHCKDGFIQRHVPIIRCQGNGRWDLPKITCMNPSSFQRT
YSKKYYYKNSPGKVNSFNSSKHFHRWIRTWQDSRR
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaacatttcttgtggatatattggaccttatctatgacatgtgctctccgcaaa
gtgaaagtggagaaaagtccaccagtgaagggctcactctctggaagagccaccctccca
tgctttttttcaactttgccgactttgcctccaagctatcacaatgttagtgagtttctc
cggattaagtggtcaaagattgaacaggacataggtggaaaagatctcaaagaaactaca
gtgttggtggcccagaatgggaatatcaagattggacaaggttacaaaggaagagtgtca
gttccaagccatccggaagacattggcgatgcatcattgactatggtgaagttacgtgca
agtgatgctgggatttatcgttgtgatgtaatgtatggaattgaagatacccaagacatt
gtttcactggcagttgatggtgttgtgttccactatcgtgcgtctaccagtagatacact
ctgaatttcaaacaggctcaggagacctgtttggagaatggtgctgaaattgcaagcccc
gaacaactgaaagctgcatatgaagatggatttgagcaatgtgatgctggctggttgtct
gatcaatctgttagatatcccattaggcaacctagaattggctgttatggagacatgatg
ggaaaagaaggagttagatcctatggatatcgcctttctaatgaaacttatgatgtctat
tgctatgttggaagcataaatggtgatgtcttccatgtaacttctcctgacaaggttact
tttaaagaagcccaaactctgtgtgaggaacaaggggcagttcttgcttcagttggagat
ctgcatgctgcctggagaaatggttttgaccaatgtgattatggctggttggcagatggc
agtgtgcgctatcctgcctctgtggcaagaatccaatgtggtggaggtttacttggagta
cgaacactatatcgctttgagaatcaaactggctttccttacccagatagcaaatttgat
gcatattgttttaaacataaagagaatgtatcagattcttcaatggttgaactaaatatt
cctttggaaagtgaatcagccaaatcgttaactgaactaaatgtaattcctccaaaaact
acacttcatccatatgtatcttcgctcacatcagaaatggttaaggtaaaacaagaaaag
aaggcaccttgggtcattaatttatctacccttctacctcaaactgttacagacatttct
gatttgtcagaaatgacccaaacagagactgtattaagtgacttagtggagattacacct
atccaagacatttctgatttcgatgaagcaagttctgaaagtccaattgaacaaatagaa
atatctccgataagaactgtggatgctgaagcaaggaataacctgagtgtacctttagaa
acaaaggaagaaacacacattggcactcaatccaccaaaataccagtagaagcaaaaagt
gataataaactcacaactgttgtcattccaaaagaattgctcacaagtatttatgaatct
gtagaagaggaagataaagaggttctttttccagatcagaagttaataatgtctagtacc
atttctaaggtagataaaacttcatcttctacgacaaccttagatgagaatgccacagat
acaccagattcagtagcaacttcatttgaaagcaaaacaatatctaccccagcttattca
acgggctttgaaataccagtgcttgcaacatctgacagagtggtacactcaacagattca
gtagagaaggaagagcacattgcaacacctgtggtttcagagaagatgaaagatacagtg
agatttattccaacaccaacagcttcagatgtgttttcaggatcagaaatatcaataggt
gaaggaagcatgtttgggtccgagtctaccacaaggcatatgcctgttgccacagatata
aatgaagtagaagggttctctaccagctatggatctgaagtgtcaagtcatcccctaata
acaccaacaccagatttgcaacaagaaaccattgaaacagatgaaaagtatgactggact
aatgagaatacaaccaaacagcaaccaatcttagatatttcaagagaagattacccagca
atggtcactgaaggtattgaaataaaacaaccttttatatttacagatgccacaaagacg
gtaactcctattgcaatttcagagaaagactatagcagttctttgattttagataccata
gaaaatgtgatttctaaaggttcgggtatagttactactgatgcagcactcacagaaatc
ataacagaagtcataccagtgtttcaacaggaatctgttaccagagatctaattaggcaa
atattggtcactgacccggcttcccccagtgttgttccaggattacattcattacctgaa
cgtgacataactgctgaaggatctgcatatgaaataaattatactactacagatacaagt
cctagtataaaaataagagattatgacacagtcacacagtctgaattgtttcctggaatc
attgatcccaagctgatagcaacaggtgttcctcccatagaatcaactaccaaaagtgaa
cataggtcttcttccttggacaaatcggtagttcccatctccagagaagaagctgctcct
gtcactaaaaagtttgatatgggggaagtagatatttcaactcatagcccagaaggatca
ggaataaaagaagaggacataggaatggaacccatttcgttttcagttagtgcaacaagc
aaaccaatggtggtaactgtcattgccaccattgttggtactacagtagataaaatccca
ccaacttcagcatccaaacctttaattatcaaaacacagccacctctgattgatagggag
cctgatgaggatacaagtaaagatgtgctgataattgatgaatctatttctcccattaaa
actactactgatgatgattttacaggcaaaacggtagagccagaaattgatactgaatat
tttacctcatcaactatcactgcagtttcccagcccacaggacaacccacagaggtttta
gagtctcaagaagaacccccagctacttcagaggttgctacagggttggaaaaccaacct
aacatacctgtatatgttttttctattccacaaaatgatacagattcattgcctggactt
tgggatatacttgattaccacatccttcgtgaactagatgaacccccactagatggtgaa
tcaaccactgatgaaccctgtacagcaagtcctgaggatgtttctgaagatatcataatt
gttgaccctttctatcctgaaatatatcaactggaggaagatgatagtgaagaagttgac
tgtgagaatactactgctatcacaactcctccaccattgcagtttattaatggaaagcag
caagtgaccactgcacctaaagatataaaagctgaagaagcaagaagtgatcaaatttta
gcacattccaaaaatgtaaattttttgcatatcaatgaaactaacatggtgtctgataat
gagttcttggcaacaatacagccaaatgaatcaactcaagatgctgctgcttcacaaaag
ctaatagaaaaatatgatatgatggaagaagtctttagtggagactcagaaactacacat
aaagatcatgagataatatatctccatggccagtccttatcagacaataatgagaaatcg
atacagtctgaaacagaacacttagaagatttaactgcccagcctgaatcaataggttct
gcttctccccacacaacaaacatagagctaaaagaagactctgaacagttaattctaaca
gcttctactcaaggttggttacctcattctaccactgtatccttagacactggagctcaa
catgacacttctgttctgcaaggaaattataatacaataattggacataatatacttaat
tcttacataaatttattgacaaccacctccagtactaatttgttgaatataccagaaggg
tctggagctgttaaagaagatggttataaatcaactagtgcattaataaaaccaggaaga
caaaaacatcctagtcaggaaattttctcagatgatggaaatcctattccacctaaacct
atgccttctgcttcacaatctcctgcttctttgtataaagagaccatgtttattgctgaa
catagtattgcggaaccttttagtactgactctgttactgaaataatttttagcactact
aaaaatcaaattaatatggaggaggatgaggaagacagtacaagctctatgtctttaaat
atggagaattcaaccactgtcaacacagaaaacttgttcaataacaatgaatacttaagt
gatcacatcagagttgtgagtgaaggatccatagccgtcacccaaacaatctctcctctc
aaaaccaaagaaatcacagaaaatagattgtccatttatgaagaatctggtgacggagaa
ttttggaagaaacctaatagagaaatacttttggggggtcctaccagccaagtggtaagt
attgactcccaatttctagatggaggttttggaggaattgatagtatgactcaaaccact
acacagacttcatttccagtgaggtctaaatatgaaagcagtaaaggaaaagaaatagat
agtacttcaagtgaatcaccattgaatcatgcaatccatactaatcatacaatggatgtg
ttggatgctgaattgtatggggaggctacagacactggaatagaaagtcaagtatcaaaa
aatgaaacttacagccaaagagcatcagataaatcagaggcaaaggtgctattgccattt
agtgacaagtctgttgtggagacaaatgaagaagtgataacaactataacaatacaggag
caaacaaatttgtttgaaacatctacgatgacaaacatttctcctgacatcagggtagga
atgaagttaataccagaattaagagaaactgatagaactgcacaacattccagcagtact
gtggagtattccgtagtagtgacaaataacataactctgcagaaaggaagttctgaattc
atagtaaatgaaagaatgcaatctcttcagctggaagatataagaaacatttctccaact
gtctttgccaaaacaattgatcttatggatataggctctggagaagaatcagttaatgac
acaagtagtatgatgctgggaaattatactcccacagaaaaagaaattaatagtaaatta
caattgagtgaaccaggttctggagacgtagattctataacatactcttctataaaaaaa
ccagtttcatctgaatttttggtagaaggatctaaaaatccaataaaaaatgaaagtgaa
gaacctagcatggtatttcagcatccactagttacaacattaaacataagtaataccact
atagtaacattagtgaaccaaagcattacaggagagtttgttaatgaatcaaaaatggaa
caggaaatgccaaatgtattaaaaacaagagcttctgataaaaccccccatttggagaca
gaaatgtattatgaagaaaaaagaaaaaatatagaaacagaatctgtaacacaacagtca
gaaatttctggtactcttaaatttaatccacatgaaaaagaactacaatttgatattaat
tatgtcactgaatctttacagaaatatcccccttcatatgataaaactgcaagcacttta
ttaataaatgcagacaaagaagaatggttggaagaaaagactaatccggccaaagacagt
cacacacttccatccccatctacaatgtatagaacaataaccacagcaattaatgttcca
tttttgtcaaaacaaggctctgaaaatgaattttttatggttcatactactgcacctagg
aattctgctacattaaaagaaagttctaatgcattaaaacttgacacacttcatcctaaa
agttcagaagaactttcttcagaggaaaaacatgaagaatttgagaggcatactgatgat
tccaaatatgcatttaaatatccaccgatgctagaagacaatttgtcttcagccagtgat
gaaacctttcctgtggtatctattgtacattctgagacatctactataaattggttcatt
tctgaagatgatcaaaataaagataagtcttaccagggagaacaaaatgtactagctgca
acagatggaacttctcaagggcaagcctggatgtttgtaaagcatgaaaataaaactcct
gcttcaaaattatttattgaaccccctactactggaacaatagaaacaccacaaaccact
ttattatctaaagtgttgagtgttggaaaccatgatggttctggggaaggatctggttgg
caagacataatagagaagaaatctgaatcatttacccagttgccaaactgggaactacca
cttctaactcgtcctcctcattattcagacattgagaacacaggtgccagagtggatgga
tcccagaaaggaccacatgctcacacagagaagcatgacaagacaacaacatctgatact
gacatctcagaaagcttttcatatgagagttccacaaacaacataaaagactatgaagat
cttatccctgtagctggtttcaaaagaaattattctgaggatatttctagcttcattgat
attattggaacagggcatggagtaatacctgataaaacaacaattattgatgttgataat
ttgaaattaaatgcaaatattgaagacattatagatcatacaactgaaaggcctggaaga
cactcaacttataatatttatacatcagcagtgaacattcaaaatacaacacctgaaata
ttaattgatgataaagttacaggtagccaaggaagttctgtaggtagtaagttcatacac
agtgaatctatcttatctgatcataacccaacatcagaggtgggttcaggagataatgcg
tttttcacaacagaaactgcaatttctcatgactcacttaaaacatccattctgcttcca
acactacctcttcttgtcagttctaccatatctccaattagttctaatgaaaataccact
gacgtaagatatgtcatagaacatacagaatcagaaggaatgatacaacctgaacaacca
acactgtcagacaatcaagtagtagctgatgaaagtgaaatttccacaatgtcaggagag
ggacaagttcagatagataaacagaaacctgtggttcttccttcaactctagcatacatg
cctccaaaaacagggcaaactttgaccacacaccaacccaaagaaagtactgcttcaaat
cagcttgtttcacaaaatctaacaaaatctaaagaaatgagctacaaggtgtatgaagga
atgaaaactgaattgacaaaatcaatagaaacagttatgaagaacttgcttctcacaaca
caaacacccgaactgcctgtgactgtgcatttactcaatgatgtttcagaacacacagaa
gaattcatgcaaagtacttcatcatcaactgattctagcaaacatggtttgccagcacca
gaaacttttagagaagttagtgctgacacagcagtaacttacaaacctgctttgaaagat
ttgtccaataatacagcatttcctgatgtggaactggagaacagtttccttgaaagtata
actacatctgatgggcatgtacaggaaacaaaagaaatgccaaaagatgctacagaaaaa
acaactgtttttgaagaatttctttcaaaagatgtgataccatcaagcttttctcattct
gacactggagacctattagaagaagaaactcctgagaaggtaaaagagctaaatcaatta
gatggaaatagtgctgatggaagtttgttatggatacaaagcataccttcttcaattcca
catgagagtaaaacaggtggagtttttggtgctgatggggaagccagtgtttggccaatc
tcaccgccaccatctgcagataaaattgtgaaatttcaaacagcccaaccagagtcaaca
actatttcttctagccttgtaaatgaacattcaggtcctgaaagcatttctgattataac
aaacaaacaataaatacaaaggatgtaaatgcaaatgaacttgtaactccaccattttta
cttctggatgttaccaatggatcagatttcctgattggtccaggtgaaggttcagtggaa
ggctcagcaattcagatcccaggccaagatctatgtaaaagcaatccatgcttgcatggg
ggcacttgttacccacgtgactctttctatatctgcacttgtatgccaggtttcagtggt
gatcggtgtgaagtagatatagatgaatgtcaacccagtccttgcagaaatggtgccaca
tgcattgatggtgtcagtacatttacttgtctttgtcttccaagctatgttggagcactt
tgtgaaaaagacactgagacctgtgattatggatggcataaatttcaagggcaatgctac
aaatactttgcccatcgcaggacgtgggatgcagctgagagagaatgccgcctgcagggt
gcccatctaaccagcatcttgtctcacgaagaacagttgtttgtaaaccgcataggacat
gactatcagtggattggcctaaatgataagatgtatgagaatgacttccgctggacagat
ggcagcgtgctgcaatatgaaaactggagaccaaaacagccagacagtttcttttcttct
ggagaagattgtgttgttataatttggcatgaaaacggtgaatggaatgatgtaccatgc
aattatcacctcacttacacatgcaagaaaggaacagttgcttgtggccaaccaccggtg
gtagaaaatgcaaatacctttggaaagatgaagccccgttatgaaattaactcattgatc
aggtatcattgtaaagatggcttcatccagcgacatgttccaataatcagatgccaagga
aatggccgatgggatttacctaaaattacctgcatgaatccatcttcattccaaaggact
tattcaaaaaaatattattataaaaattcaccaggaaaggtgaactcgtttaattcatca
aaacattttcatcgttggatcaggacatggcaagattcacggcgctga
DBGET
integrated database retrieval system
