Notechis scutatus (mainland tiger snake): 113416074
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Entry
113416074 CDS
T09026
Symbol
PABPC4
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03015
mRNA surveillance pathway
nss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113416074 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
113416074 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113416074 (PABPC4)
03041 Spliceosome [BR:
nss03041
]
113416074 (PABPC4)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113416074 (PABPC4)
mRNA cycle factors
Stress granule specific factors
113416074 (PABPC4)
Spliceosome [BR:
nss03041
]
Complex C
Other components
Complex C specific factors
113416074 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_RDR6
RRM_5
RRM_7
NOP5NT
Motif
Other DBs
NCBI-GeneID:
113416074
NCBI-ProteinID:
XP_026529536
Ensembl:
ENSNSUG00000012165
UniProt:
A0A6J1UF08
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MNASAGSSYPMASLYVGDLHPEVTEALLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPGDAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVXVSQPEAETXC
ISVLTHQAAGSPGPSFGLLPVSSRAGKTLSVKVMTDPAGKSKGFGFVSFEKHEEASKAVE
EMNGKDINGKIVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK
LRKEFSPFGSITSTKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ
RKEERKAHLTNQYLQRIAGMRALPANTIVSQFQPASGGYFMPAVPQVQNRPTYYAPNQIT
QMRPNPRWQPGGRPQGFQGMPNSMRHSGPRPTLRHLAPTNTAQASRSLPGASQRIGVAAT
APNLVPRPPVATQAPRAVPPYKYAAGIHSPHPAVQPLQAPQPAVHVQGQEPLTASMLAAA
PPQEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAV
LQAHQAKKEAAQKVGIITATS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcctccgccgggagcagctacccgatggcgtcgctgtacgtgggggacctgcac
cccgaggtgacggaggcgctgctctacgagaagttcagccccgctgggcccgtcctctcc
atccgcgtctgccgggacatgattacccggcgctcgctgggctacgcctacgtcaacttc
cagcagcccggcgacgctgagcgagccctggataccatgaactttgatgtaatcaaaggc
aagcccatccgcatcatgtggtctcagcgggacccctctttgaggaaatcgggcgtgggg
aatgtcttcattaagaacctggataaatccatagacaacaaagcactttatgacacgttc
tctgcctttgggaacatcctttcttgcaaggtggtgtgtgatgagaacggctccaagggc
tatgcttttgtgcactttgagacacaagatgccgcagaccgcgccatcgagaagatgaac
ggcatgctgctgaacgaccgcaaagtgtgagtgtctcagccagaagctgagacatgatgc
atctcagtattaacccaccaggctgctggttctcctggcccaagctttggcctgctgcct
gtctcctccagggctggtaagaccctcagtgttaaagtgatgactgatccggctgggaaa
tccaaaggttttggcttcgtgagttttgaaaagcatgaagaggccagcaaggcagtagaa
gaaatgaatggaaaagatatcaatgggaaaattgtgtttgtgggtcgtgcacagaagaag
gtggagcggcaggcagagctgaagcgcaggtttgagcagctgaagcaagagaggatcagt
cgttaccagggagttaatctctacatcaagaacttggatgacacaattgatgacgagaag
ctgagaaaggagttctctccattcggatccatcacaagtactaaggtgatgctggaagat
ggtcgaagcaaaggcttcggcttcgtctgcttctcctccccagaagaagccaccaaagcc
gtaactgagatgaatgggcgcattgtgggctccaagccgctgtatgtggccttggcccag
aggaaggaggagcgcaaggcccacctcaccaaccagtacctgcagcgcatcgccggcatg
agagctctgccagcgaacaccattgtcagccagttccagccggcttccggagggtatttc
atgcccgctgtgccccaggttcagaacagacccacatactatgcacctaaccagataact
cagatgagacccaatccacgctggcagccaggaggaaggcctcaaggcttccaaggtatg
cccaacagtatgcgccattctgggccgcggccaacactgcggcatttggctcccacaaat
acagctcaagcatcccgtagtttgcctggtgcttcccagaggattggggttgccgccacg
gccccaaatctggttcctcggccacctgtagccacccaagctcccagggctgttccaccc
tacaaatatgctgcaggcatccacagtccccacccagcagtccagcctttacaggccccg
cagcctgctgttcacgtccagggacaagagcccttgacggcatccatgctggctgctgca
cccccccaggagcaaaagcaaatgctgggagaacgtctcttcccgttgatccaggcaatg
cacctcagtctggcagggaagataactgggatgctgctggagatcgacaattcagagctg
ctacacatgctggagtctccagaatccctccgctccaaggtggaggaagcagtggcggtg
ctacaggctcaccaagcaaagaaggaagctgcccagaaggtgggcatcattactgctacc
tcgtaa
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