Notechis scutatus (mainland tiger snake): 113416139
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Entry
113416139 CDS
T09026
Symbol
COL5A3
Name
(RefSeq) collagen alpha-3(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113416139 (COL5A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nss00536
]
113416139 (COL5A3)
Glycosaminoglycan binding proteins [BR:
nss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113416139 (COL5A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113416139
NCBI-ProteinID:
XP_026529639
UniProt:
A0A6J1UPH2
LinkDB
All DBs
Position
Unknown
AA seq
1792 aa
AA seq
DB search
MAASPAGLRGHLVCFLALLLRELPRARADGLVDVLQAFGVREGKNGVTIAAGICTQRNGS
EETDLAFRLENHTHFITPTRQLFPDGPFPVDFSILATMRALKGSQSFLFSLHDERGVQQL
GVEIGRSPVFLYEDQLGFPAPEDYPHFHRVNLADGKWHRIALSVKGESVSLNIDCEDAIT
LPLKRSKQPVVSIDGVTLLGARRPDEDIFEGDLQQLLLVPDPAAAAQYCQDYMPDCNRQL
IYKLQTQDAEENIPQRKGKKGKGKGRGKGRKKGRGKKKRNKESLEKSSLSPTSGENEIPT
DITPMKAATEFWGKDPDAELGILTSSTMTANFNLTHNYEDFLGEEYLINENRDLNANDTY
RAFDERLDNKDYEDYYDRRGASEAEHYDPAEHIEATILLPEQQPNLKGQKGEAAVIEPGM
VFEGPAGYRGPQGEMGPIGSPGPPGFPGDPGERGPPGLPGLPGADGLRGPPGTMIMLPFQ
FRGDLLKGPSVSFQEAQAQAILQQAKLSMKGPPGPMGLTGRPGPLGLPGKSGQKGDSGDS
GPQGPPGIQGPIGPPGKIGKRGRSGADGGRGLPGETGPKGDRGFDGLPGLPGEKGNRGDI
GKPGLPGPPGNDGSKGSEGVQGPRGQPGEAGVRGLPGSRGNPGSSGQTGITGIDGVPGHK
GNMGIPGEPGPPGQQGNPGSHGLPGPQGPIGLPGEKGPPGKPGIPGLAGMDGPPGHPGRE
GPAGEKGTQGPSGAAGPVGYPGPRGVKGAFGIRGLKGSKGEKGEDGFPGFKGDMGPKGDW
GDAGPLGIRGEDGPEGLKGQVGPTGEAGPSGLAGEKGKLGVPGLPGYPGRQGPKGSTGFP
GALGLIGEKGKRGKAGQAGQTGQRGPPGIPGERGLPGPTGKPGSKGDSGHDGSPGNVGEK
GPNGPQGSNGFPGSKGPPGPVGKDGLPGHPGQRGEPGFHGKTGPPGPTGVVGPQGNTGET
GPMGERGHPGSPGPSGEQGLPGIAGREGAKGDPGPSGIPGIPGPTGIRGFTGARGPVGEK
GPIGLKGAEGPLGPAGSMGPPGERGPSGAAGGIGLPGRGGNPGPPGPAGEKGAPGDRGPM
GPSGHDGIPGPVGLPGPAGPPGLAGEDGDKGEMGSPGQKGSKGEKGDAGPPGPTGMQGPI
GPPGLPGADGEPGRRGQQGMFGQKGDEGPRGFPSVNGPPGLQGMPGLPGEKGESGETGLM
GPPGAPGARGPQGPSGGDGPPGQRGGVGQPGAVGEKGEPGEAGDPGPPGEPGLQGVKGDV
GEKGDSGQSGAAGPPGKKGPLGEDGSKGNMGPIGFPGDPGPTGDPGPPGLDGISGEKGDV
GDPGLPGPPGALGEPGPPGPPGKRGPFGQAGREGRQGEKGTKGESGIEGPSGKMGPVGPQ
GPPGQPGSEGLRGIPGAAGEPGLLGAPGQAGPPGPMGPAGLPGLKGDSGYKGEKGHAGLI
GLIGPPGEMGEKGDQGLPGNQGTPGTKGDPGNTGPHGPPGPPGSPGLLGPLGQKGNKGSL
GPIGPKGDPGPRGTPGPPGRPAELQNPMPMGSRRTSRQDWEVEEQRDAPVEGGIDPDADG
LAEVLAALSSLRDEVEQMRCPLGTLESPARVCKELQFCHAHLKDGEYWIDPNQGCSRDAF
KVYCNFTAGGETCLFPDKKFEAVRLAAWSKEQPGSWFSTFKRGKKFSYVDADGNPVLVTQ
LTFLRLLSAVARQNFTLLCQNMAAWYEADTSNHMKALHFRAFNDVELMHNSTETPIHALY
DGCQVRKGQERTVLQVVTQHVEHLPLVDVAVQDFGETNQKFGFELGPVCFSG
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagccccgcgggactgaggggccacctggtctgcttcctggccctcctgttg
cgagaacttccccgggcgagggcagatggccttgtggatgtgctccaggcgtttggtgtg
cgggagggcaagaatggggtcaccatcgctgctggcatctgcactcagaggaatggatcg
gaggaaactgacctggccttccgcctggagaatcacactcatttcatcacccccaccagg
cagctcttccctgatggccccttcccagtggacttttcaatattagccacaatgagagca
ctcaaaggcagccaatcttttttgttttccctgcatgatgaacgtggtgtacagcagctt
ggtgtagagattggacgttcccccgtctttctctatgaagaccagctgggtttcccagct
cctgaggattatcctcattttcacagagtcaacttggctgatggcaaatggcaccgcatt
gctctgagtgtgaaaggtgaaagcgtatctttgaacatcgactgtgaagatgctataacg
ttgcccttgaagcgaagcaagcagccagttgtcagtattgatggggtcaccttgcttggg
gcacgtcgaccagatgaagacatttttgagggtgatctccaacaattactgcttgtgcca
gatccagcagctgctgcccaatattgccaggattacatgcctgattgcaacagacagctc
atctacaaattgcagacccaggatgcagaagagaacatcccacagaggaagggaaagaag
ggcaaaggcaaaggaaggggcaagggcaggaagaaaggtagaggcaagaagaagagaaac
aaagagtccctcgagaagtcctcgctcagtccaacctcaggcgagaatgagattccaaca
gatattactccaatgaaggcagctactgagttctggggaaaggatcctgatgcagagctt
ggcatcctcacttctagcactatgacagccaacttcaaccttacacacaattatgaggac
tttcttggagaagagtatttaatcaatgaaaatagagacttgaatgccaatgacacttac
agagcatttgatgagagacttgacaataaagattatgaggactactatgaccgacgaggg
gccagtgaagcagagcactatgatccagctgagcacattgaagccaccatcctacttcct
gagcagcaaccaaatctgaagggacagaaaggggaggcagcggtcatcgaacctggtatg
gtttttgaagggccagctggatatcggggtccacagggagagatgggtccaataggatca
ccagggccaccgggatttccaggagatcctggcgagcggggaccaccaggcctcccaggc
cttccaggagctgatgggctacgtggacctcctgggacaatgatcatgttgccattccag
tttcgtggtgatttacttaaaggaccttcagtatctttccaggaggcccaggctcaggct
attttacagcaagccaagctttccatgaaagggcctcctggcccaatgggactcacggga
aggccaggaccactaggtctaccaggaaaatcaggacaaaaaggggattcgggtgattcc
ggaccccagggtccccctgggatacagggaccaattggacccccagggaaaattggcaag
aggggtcgttcaggagctgatggcggcagaggactcccaggagaaacaggacccaagggt
gacaggggctttgatggtctcccaggactccctggagaaaagggaaacagaggagatata
gggaagccaggcctacctggacctcctggaaatgacggttctaagggctctgaaggtgtt
caagggcccagaggacagcctggggaagctggtgtacgtggtttgccaggctcgcgaggt
aatcctggttcttccggacagacgggtattactggtattgatggtgttcctggacataag
ggcaacatgggtattccaggtgaaccaggcccacctgggcaacaaggaaacccaggatct
cacggcttgcctggtcctcagggccccattgggcttccaggagaaaagggtccaccagga
aaaccaggaataccaggactggctggaatggatggacctccgggtcatcctggaagagaa
gggccagctggagagaaaggaactcagggtccatctggtgcagcaggaccagttggttac
ccaggtccacgaggagtcaagggggcatttggaataaggggcctaaaaggcagcaaaggt
gagaagggtgaagatggattccccggcttcaaaggtgatatggggcccaaaggcgattgg
ggtgatgctggcccactgggcatacggggtgaagatggccccgaggggctgaaaggacag
gtgggacctactggggaagcaggtccttctggcctagctggtgagaagggcaaattgggt
gtgccagggttgccaggttatcctggccgccaaggacccaagggttcgactggattccca
ggggccctaggcctcattggagaaaaaggcaaacgaggaaaagctggtcaggcagggcag
actggacagcgtgggcctccgggtattcctggtgaacgtggtttgccaggacctacaggg
aaaccgggatcaaagggtgactctggccatgatggctccccaggaaatgtaggagaaaag
gggcccaatgggccacaggggtccaatggattcccaggatcaaagggaccgccaggtcct
gtaggaaaagatggtctaccaggacatccaggccagcgtggtgagccaggatttcatggc
aaaactggcccaccagggccaacaggagttgtggggccacagggaaacacgggggaaact
ggtcctatgggggagagaggccacccaggctcccctggtccttctggagaacaaggcctg
cctggtattgctggtagggaaggtgccaagggtgatcctggacctagtggcatcccaggc
attccaggtcctactggaattagaggcttcacaggagcccgtggtcctgttggagagaaa
ggaccaattgggctgaaaggagcagaagggccacttggtccagcaggctccatgggtcct
cctggggagcgaggtccctctggagcagctggaggcattggacttccaggaagagggggt
aatcctggaccacctggacctgcaggggagaaaggagcaccgggtgatcgaggaccaatg
ggtccatctggtcatgatggaatcccaggtccagtggggcttccaggcccagctgggcct
ccaggacttgccggagaagacggtgacaaaggagaaatgggtagcccaggacagaaggga
agcaagggcgagaaaggagatgcgggtcccccaggaccaaccgggatgcagggtcctatt
gggcctccaggacttcctggagctgatggggaacctgggcgccgagggcagcagggcatg
tttggccaaaaaggagatgaaggtccccgcggttttccaagtgtcaatggcccacctggg
ttacagggaatgccaggactcccaggtgagaagggcgaaagtggtgaaactgggctaatg
ggcccacctggagctccaggggcccgaggcccacaaggtcccagtggtggagatggccca
ccaggtcagcgtggtggggtaggccagcctggtgccgttggtgaaaagggtgagccaggt
gaagcaggggatcctggaccaccaggggagccaggcctacaaggagtgaaaggtgatgtt
ggtgaaaaaggagattctggccagtctggagcagcagggccacctggaaaaaaaggcccc
ctgggagaagatgggtccaaagggaacatgggtccgataggattccctggtgacccaggt
ccaaccggagatcctggtcctcctggcctagatggaatttctggtgagaaaggtgatgtg
ggcgatccaggacttccgggtccacctggagctttgggggaaccaggtcctcctgggcca
ccagggaagaggggaccttttgggcaagctggacgtgaaggtcgacagggtgagaaaggg
accaagggtgaatctggtatagaaggtccctcagggaaaatggggcctgtgggcccacaa
gggcctccaggccaacctggttcagaaggtctgcgtggaattcctggtgcagcaggtgaa
cctggtctactgggagctccaggacaggcagggcccccaggtcccatgggtcctgcgggg
ctccctggtctcaaaggtgattctggctacaagggagagaagggtcatgcaggactcatt
gggttgattggtcctccaggtgagatgggtgaaaaaggtgaccaggggctgccagggaac
cagggaacaccaggcactaaaggcgaccctggtaacactggacctcatggtcctccaggc
ccacctggatctcccggcctcttaggccctctgggacaaaaaggcaacaaggggtctttg
ggacctattggaccaaaaggtgatccaggaccacgagggacaccaggaccaccaggccgt
cctgctgaactgcagaatccaatgcccatgggaagtcggcgcacaagccgccaagactgg
gaggttgaagaacagagggatgctccagtggaagggggtattgatcctgatgctgatggg
ctggcagaagtcctggcagccctgagctctctacgcgatgaggtggagcaaatgcgatgc
ccactcggcaccctggagagtccagccagggtctgcaaggagcttcagttttgtcatgct
catctcaaagatggtgaatactggattgatccaaaccagggatgcagccgagatgccttc
aaagtttactgtaatttcacagctggtggagaaacctgcttattccctgacaagaaattt
gaggctgtacgacttgccgcctggagcaaggagcaaccaggaagttggttcagcactttc
aaaaggggcaaaaagttctcctatgtggatgcagatggcaaccctgtgctggtcactcaa
ctcacattcctgcgcctgctgagtgctgttgcccggcagaacttcaccctcctctgccaa
aatatggctgcttggtatgaagctgacaccagcaaccacatgaaggcgctgcattttcgg
gctttcaatgatgtggagttgatgcacaacagcacagaaactcccatccatgccttgtat
gatggctgccaggtacgtaaaggacaggagcggacagttctacaagtagtgacgcaacat
gtggagcatctaccattggttgatgtggctgttcaagattttggagaaaccaatcaaaag
tttggctttgagctcggcccggtctgcttcagtggctga
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integrated database retrieval system
